| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4003 |
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| Symbol | |
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| ID | 6160514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4486009 |
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| End bp | 4487370 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641666783 |
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| Product | sun protein |
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| Protein accession | YP_001793022 |
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| Protein GI | 171060673 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00000045232 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAACCTG CCCCACCCGC CCCCCAGCCG CCGATCGGCG CCGCCCCGTC ACCTCAGTCC
CTGCCTCTGC ATCGCCTGCT CGGCCACACC GCCGACGCCG TCGCGCTGGT GCTGGCCGGC
CATTCGCTGA ACGAGGCGCT CGCCGCCTGT CCGGCGCCGG CCCGGCCGGG CTGCCAGGCC
CTGAGTTTCC ACGTGCTGCG CTGCCTGGGC GGCGCGCAGG CGGCGCGTGC GCACCTGGCC
GCGCGCATGC CGCCGCCGCC GGTCCATTCG CTGTTGTTAA GCGCGCTCGC GCTGCTCTGG
CCGCGTGAGC CGCAGCCCTA TGCACCGCAC ACCCTGGTCG ACCAGGCGGT GGCCTGCGCA
CACGTCCGGG CGCCGGCCAG CGCGTCGTTC GTGAATGCGG TGCTGCGACG TTTCCTGCGC
GAGCGCGACG CGCTCGTGCC GCGCTGGGAG GCCGCCGATC CGGTGGTGCG CCATCAGCAC
CCGCGCTGGT GGATCGATCA ATTGCAGCGC GACTGGCCCA AACAATGGCA GGCGCTGCTC
GGCGCCGCCA ACCAGCACGC GCCGATGGCC TTGCGCGTCA ACGCGCGCCA GACGGACGCG
GCGGGCTACC GGGCCGAACT GGCGGCCATC GGCATCGAGG CGCAGGTCGT GTCGAGCCAT
GCGCTGGTGC TGCACAAGCC GGCGCCGGTG CAGGCCTTGC CCGGGTTCGA GCGCGGGCGG
GTGTCGGTGC AGGATCTGTC GGCCCAGGTG GCCGCGCCGC TGCTGATCGG CAGCGGGCCG
GATCGGTTGG CGCCGGGTGC GCGCGTGCTC GATGCCTGCG CCGCGCCGGG TGGCAAGACC
GCCCATCTGC TCGAACTGGC CGAACTCGAC CTGCTGGCGC TCGATGTCGA TGCCACCCGC
CTGGCCCGCG TCGAGCAGAC CCTGCAGCGT GTCGGCCTGC GTGCCGCGCT GGCGGTGGCC
GATGCCGGCG AGCCGTCGCG CTGGTGGGAC GGGCAGCCGT TCGACGCGAT CCTGCTCGAC
GCGCCCTGCA GCGCCTCGGG CATCGTGCGC CGTCACCCCG ACGTGCGCTG GTTGCGTCGC
GCCAGCGACA TCAAGGCGCT GGCGGCCACC CAGTCGCGCC TGCTCGATGC CCTCTGGGGG
TTGCTCAAGC CGGGCGGGCG TCTCGTCTAC GCAACGTGTT CGGTGTTCCG GGCCGAGGGT
TCGGGCCAGG TTGCTGCGTT TTTACAACGA ACACCCGGTG CGATCGCCAG GCCGTCGCCC
GGTCATCTGC TGGGTGTCGT CGACAATCCG GCCCAGGCCG GGGAGGTTGC CAGCGTCGCT
GGCGACGGCT TTTTTTATGC CCGGCTGGAC AAATCGATGT GA
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| Protein sequence | MKPAPPAPQP PIGAAPSPQS LPLHRLLGHT ADAVALVLAG HSLNEALAAC PAPARPGCQA
LSFHVLRCLG GAQAARAHLA ARMPPPPVHS LLLSALALLW PREPQPYAPH TLVDQAVACA
HVRAPASASF VNAVLRRFLR ERDALVPRWE AADPVVRHQH PRWWIDQLQR DWPKQWQALL
GAANQHAPMA LRVNARQTDA AGYRAELAAI GIEAQVVSSH ALVLHKPAPV QALPGFERGR
VSVQDLSAQV AAPLLIGSGP DRLAPGARVL DACAAPGGKT AHLLELAELD LLALDVDATR
LARVEQTLQR VGLRAALAVA DAGEPSRWWD GQPFDAILLD APCSASGIVR RHPDVRWLRR
ASDIKALAAT QSRLLDALWG LLKPGGRLVY ATCSVFRAEG SGQVAAFLQR TPGAIARPSP
GHLLGVVDNP AQAGEVASVA GDGFFYARLD KSM
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