Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3996 |
Symbol | rplB |
ID | 6160825 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4479169 |
End bp | 4479993 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641666774 |
Product | 50S ribosomal protein L2 |
Protein accession | YP_001793015 |
Protein GI | 171060666 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0090] Ribosomal protein L2 |
TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00000189322 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCTGTCG TCAAGGTCAA ACCGACTTCG CCAGGCCGTC GTGGCGTGGT GAAGATCGTG CACAAGCACC TGCACAAGGG CAAGCCCGAA GCGTCGCTGC TCGAGCCCCA GATGCAGAAC GCTGGCCGTA ACAACAACGG TCACATCACC GTTCGCCACA AGGGCGGCGG TCACAAGCAT CACTACCGCG TGGTGGACTT CCGTCGCAAC AAGGACGGCA TCCCCGCGAA GGTCGAGCGC ATCGAATACG ACCCCAACCG CACGGCGCAC ATCGCGCTGA TCTGCTACGC GGATGGCGAG CGTTCGTACA TCATTGCGCC GCGTGGCCTG GAAGCGGGTC AGACGGTCCT GAACGGCGCC GAAGCGCCGA TCAAGGCCGG CAACACGCTG CCGATCCGCA ACATCCCCGT GGGCTCGACC ATCCATTGCG TCGAGATGAT GCCCGGCAAG GGTGCGCAGA TCGCGCGTTC GGCTGGCACC TCGGTGACGC TGATGGCCCG TGAAGGCATC TACGCCCAGG TTCGCCTGCG CTCGGGTGAG GTTCGCAAGA TCCACATCGA CTGCCGTGCC ACCATCGGTG AAGTCTCCAA CGAAGAGCAC AACCTGCGCC AGTACGGCAA GGCCGGTGCG AAGCGTTGGC TGGGTATCCG CCCGACCGTT CGCGGCGTGG CGATGAACCC GGTGGACCAC CCGCACGGCG GCGGCGAAGG CCGCACCGGC GAAGGTCAGG CGCCGGTGTC TCCGTGGAAC ACCCTCACCA AGGGCTACCG CACCCGCAAC AACAAGCGCA CGCAGACGTT CATCGTCTCG CGTCGCAAGA AGTAA
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Protein sequence | MAVVKVKPTS PGRRGVVKIV HKHLHKGKPE ASLLEPQMQN AGRNNNGHIT VRHKGGGHKH HYRVVDFRRN KDGIPAKVER IEYDPNRTAH IALICYADGE RSYIIAPRGL EAGQTVLNGA EAPIKAGNTL PIRNIPVGST IHCVEMMPGK GAQIARSAGT SVTLMAREGI YAQVRLRSGE VRKIHIDCRA TIGEVSNEEH NLRQYGKAGA KRWLGIRPTV RGVAMNPVDH PHGGGEGRTG EGQAPVSPWN TLTKGYRTRN NKRTQTFIVS RRKK
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