| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3963 |
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| Symbol | |
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| ID | 6162388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4440691 |
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| End bp | 4442226 |
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| Gene Length | 1536 bp |
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| Protein Length | 511 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666741 |
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| Product | deoxyribodipyrimidine photo-lyase |
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| Protein accession | YP_001792982 |
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| Protein GI | 171060633 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0415] Deoxyribodipyrimidine photolyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000556996 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCAGCCT CCTTTTCTCC CCTCGCACCG TCCGCTCCCG CCGCTGCGGC TCACCCGCAT
CGCCAACCGG CCGTGATCGA CACGCCGGTC GACGCCGCGC TGGTCTGGCT GCGCCGCGAC
CTGCGGCTCG ACGACCACGC CGCGCTGCAT CACGCGCTGC GCAGCGCGAA GAAGGTCTGG
TGCGCCTTCA TCTTCGACAC CACGATCCTC GATGCGCTGC CACGCGCGGA TCGGCGGGTC
GAGTTCATCC ACCACGGCAT CGTCGAGCTC GACGGCCTGC TGCGCGCCCA CGGCAGCGGC
CTGATCGTGC GTCACGGCGA CCCGCTGCAG GAGATCCCGG CGATCGCCGG CGCCCTGGGC
GTGCAGGCGG TGCACATCAA CCGCGACTAC GAACCCGCCG CCGTGGCGCG CGACGCCCAG
GTGCGCGGCG CGCTGGCGCA CGCGGGCATC GCGCTGCACA GCCACAAGGA CCAGGTGATC
TTCGAGACCG ACGAGATCCT GACGATGGCC GGCTCGCCCT TCAGCGTCTT CACGCCCTAC
AAGAACGCCT GGCTGAAGAA GCTCGACGGC TACTACCTGC GCGCCTACCC GGTGCAGCGC
CACATCGGCG CGCTGGCGCC GGTGCCGGCG GCGCTGGACC GCGGCGTGCC GACGCTCAAC
GACCTCGATT TCCTGCCGAC CGACATGGCC GCCCGGCTGC ATCCGGGCGC CTCGGGCGGC
GCGACGCTGC TGCTCGACTT CCTGGAGCGC ATCGACCGCT ATGCCGACAC GCGCGACTTC
CCGGCGATCA AGGGGCCGAG CTACCTGAGC GTGCACCTGC GTTTCGGCAC CGTCTCGATC
CGCCAGCTGG CGCGGCTGGC ACACGAGCGC ATGGTGGGCG GCTCGCGTGG CGCCGAGGTC
TGGCTGTCGG AGCTGATCTG GCGCGACTTC TATCACCAGA TCCTGCACCA CCACCCGCGC
GTGGTGACGC ACTGCTACAA GCCCGAATAC GAAGCGCTGC GCTGGGAACA CGGCAAGCAC
GCCGAGCAGC TGTTCGCCGC CTGGTGCGAG GGCCGCACCG GCTATCCGAT CATCGACGCG
GCGATGCTGC AGCTCAACCG GACCGGCTAC ATGCACAACC GCCTGCGCAT GGTGGTGGCG
AGCTTCCTGA CCAAGGATCT GGGCATCGAC TGGCGCCGCG GTGAAGCGTA TTTCGCGCTG
CAGCTCAACG ACTACGACCT CGCCGCCAAC AACGGCGGCT GGCAGTGGGC GGCATCGACC
GGCTGCGACG CGCAGCCGTA TTTCCGCATC TTCAACCCGA TCAGCCAGAG CCTGCGCTTC
GACGCCGAGG GGCGTTTCAT CCGCCGCTAC CTGCCGCAGC TCGCCGACCT CAGCCGCGCG
GCGATCCACG CGCCGTGGCA GGCCAAGCCG CTCGAACTGC AGGCGGCGGG CGTCAAGCTC
GGCCGCGACT ACCCGATGCC GGTGGTCGAA CACGCCGAGG CGCGCGAGCT GACGCTGGCG
CGCTTCGCAG CGGTCAAGGG GGCGGCGGCT CGATGA
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| Protein sequence | MPASFSPLAP SAPAAAAHPH RQPAVIDTPV DAALVWLRRD LRLDDHAALH HALRSAKKVW
CAFIFDTTIL DALPRADRRV EFIHHGIVEL DGLLRAHGSG LIVRHGDPLQ EIPAIAGALG
VQAVHINRDY EPAAVARDAQ VRGALAHAGI ALHSHKDQVI FETDEILTMA GSPFSVFTPY
KNAWLKKLDG YYLRAYPVQR HIGALAPVPA ALDRGVPTLN DLDFLPTDMA ARLHPGASGG
ATLLLDFLER IDRYADTRDF PAIKGPSYLS VHLRFGTVSI RQLARLAHER MVGGSRGAEV
WLSELIWRDF YHQILHHHPR VVTHCYKPEY EALRWEHGKH AEQLFAAWCE GRTGYPIIDA
AMLQLNRTGY MHNRLRMVVA SFLTKDLGID WRRGEAYFAL QLNDYDLAAN NGGWQWAAST
GCDAQPYFRI FNPISQSLRF DAEGRFIRRY LPQLADLSRA AIHAPWQAKP LELQAAGVKL
GRDYPMPVVE HAEARELTLA RFAAVKGAAA R
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