| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3948 |
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| Symbol | |
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| ID | 6162934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4426402 |
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| End bp | 4428510 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666726 |
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| Product | prolyl oligopeptidase |
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| Protein accession | YP_001792967 |
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| Protein GI | 171060618 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1505] Serine proteases of the peptidase family S9A |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGTCTG CCGATCCGTC CGCCGAAGAT CCCTTTCTCT GGCTCGAGGA CGTGCTCGGT
GAACGCGCGC TGGCCTGGGT CGGCGCGCGC AACCGGGAGT CGCAGAGCGA GCTCACGGCC
TTGCCCAGCT ACGCCGAACT GCGCCCGCGC CTGCTGGCGG TGCTCAACGC CCGCGACTGC
ATCCCGCAGG TCACGCGGCG CGGCGAGTTC TTCTACAACT TCTGGCAGGA CGCCGGCCAC
CAGCGCGGCC TGTGGCGGCG CACCACGCTG GCGCAATACC GCCAGCCCGA GCCGGCCTGG
CAGACCCTGC TCGACCTCGA TGCGCTGGCC GCCGCCGAAG GCGAAGACTG GGTCTGGAAA
GGCGCTACCT GTCTGGCGCC GGGCTGGCGC CGTGCGCTGG TGCAACTGTC GCGCGGCGGC
GCCGACGCCA CGGTCGTGCG CGAGTTCGAC CTCGACGCGC TGCAGTTCGT CGCCGACGGT
TTTGCGCTGC CCGAGGCCAA GAGCGACGTC AGCTGGCTCG ACGCCGACAC GCTGCTGGTC
GGCACCGACT TCGGCCCGGG CACACTGACC GATTCCGGCT ATCCGCGCCT GATCAAGCGC
TGGCGCCGCG GCACGCCGCT GGCCTCGGCG CAGACGCTGT TTGCCGGCGA GCCCGGCGAC
GTGTCGGCCT GGTCCAGCGT CGAAGTGCAC CCGAAGCGCC GGCGCGTGCT GCTCGGCCGC
TCGGTCGATT TCTACAACAC CCGCGCCTGG CTCTGGCTCG ACGGCGGCGA GGCCGGCCCC
GGCACGCTGA CCGAATTGCC CAAGCCGCAG GATGCCGAAC TCGACCTGCA CGACGACTGG
GTGGCGCTGA AGCTGCGCAG CGCGTGGCGC GTCGGTGCCG ATCTGCACCC CAGCGGCGCG
CTGCTGGTGG CGAAGCTGGA TGCGTTGCTC GCAGGCCGGG CGGACTGGCA GCGCGTCTTC
ACGCCCGGCG AGCGGCGCTC GCTCGATCAC TGGGCCTGGA CCCGTTCGCA GCTGCTGCTC
AACGTGCTCG ACCAGGTCAG CAACCGGGTC GAGGCCTGCG CCTTGCCGGG CGAGGACGCC
GTCGGTGATC AGGCTCCGTG GGCTTGCCGG GCGGTCGATC TGCCCGGGCC CGGCGCGCTC
AGCGTGGTCG CCCTGAACGA TCCGTGGACC GACGCCGACC CGCTGGCCGA GCAGTTCCTC
GTCCACTACA CCGACTTCCT GACGCCCGAC CGGCTGATGC TCGCCAGCCT CGACGGTGCG
CCGCTGCAGA CGCTCAAGCA GCGCCCGGCG CAGTTCGACG CCAGCGGCAT GTGCGTCGAG
CAGCGCCTGG CCCGCAGCGC CGACGGCACG CAGGTGCCGT ACTTCATCGT CTGGCCGGCC
GGTGCGATGG CCGACGGCGA CAACCCGACG CTGCTGTACG GCTACGGCGG TTTCGAGGTC
TCGCTGCAGC CCTGGTATTC GGGTGTGTTC GGCCAGGCCT GGTTCGCGCG CGGTGGCGTG
CTGGTGGTGG CCAACATCCG CGGTGGCGGC GAGTTCGGCC CGGCCTGGCA CCAGGCGGCG
GTCAAGGCCC ACAAGCAGCG CAGCTACGAC GACTTCATCG CCGTGGCCGA AGACCTCAAA
CGCAGTGGCG TGACCCGGCC GGCGCGGCTG GGCATCATGG GTGGCAGCAA CGGCGGCCTG
CTGGTGGGCG CGACCTTCAC GCAACGGCCC GAACTGTTCG GCGCGGTGGT CTGCCAGGTG
CCGCTGCTCG ACATGCGGCG CTACCACCGC CTGCTCGCCG GCGCCTCGTG GATGGCCGAA
TACGGCGACC CCGACCAGCC TGAAGACTGG GCCGTGATCC GGCGCTACAG CCCCTATCAC
CAGCTGAGCG CCAACCGGGT CTACCCGCGC GTCCTGCTGA CCACCTCGAC CCGCGACGAC
CGGGTCCACC CCGGCCACGC CCGCAAGATG GTGGCGCGGC TGCAGGCGCT CGGGCATGCG
GTGCTGTATT ACGAAAACGT CGCCGGCGGT CACGGTGGCG CGGCCGACAA CGAACAGCGC
GCCCACCTGC AGGCGCTGGA ATACAGCTAT CTCTGGGCCC AGCTCGGTCA GGGCTCGGCA
GCGGACTGA
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| Protein sequence | MMSADPSAED PFLWLEDVLG ERALAWVGAR NRESQSELTA LPSYAELRPR LLAVLNARDC
IPQVTRRGEF FYNFWQDAGH QRGLWRRTTL AQYRQPEPAW QTLLDLDALA AAEGEDWVWK
GATCLAPGWR RALVQLSRGG ADATVVREFD LDALQFVADG FALPEAKSDV SWLDADTLLV
GTDFGPGTLT DSGYPRLIKR WRRGTPLASA QTLFAGEPGD VSAWSSVEVH PKRRRVLLGR
SVDFYNTRAW LWLDGGEAGP GTLTELPKPQ DAELDLHDDW VALKLRSAWR VGADLHPSGA
LLVAKLDALL AGRADWQRVF TPGERRSLDH WAWTRSQLLL NVLDQVSNRV EACALPGEDA
VGDQAPWACR AVDLPGPGAL SVVALNDPWT DADPLAEQFL VHYTDFLTPD RLMLASLDGA
PLQTLKQRPA QFDASGMCVE QRLARSADGT QVPYFIVWPA GAMADGDNPT LLYGYGGFEV
SLQPWYSGVF GQAWFARGGV LVVANIRGGG EFGPAWHQAA VKAHKQRSYD DFIAVAEDLK
RSGVTRPARL GIMGGSNGGL LVGATFTQRP ELFGAVVCQV PLLDMRRYHR LLAGASWMAE
YGDPDQPEDW AVIRRYSPYH QLSANRVYPR VLLTTSTRDD RVHPGHARKM VARLQALGHA
VLYYENVAGG HGGAADNEQR AHLQALEYSY LWAQLGQGSA AD
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