Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3945 |
Symbol | |
ID | 6162931 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4423121 |
End bp | 4424995 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641666723 |
Product | phosphoenolpyruvate carboxykinase |
Protein accession | YP_001792964 |
Protein GI | 171060615 |
COG category | [C] Energy production and conversion |
COG ID | [COG1274] Phosphoenolpyruvate carboxykinase (GTP) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCATC CCGCCATGGC CGGCGTGCAC GTGAACGCAC CGTCATTCGT CAAGAACGCC AAGCTGATCG CCTGGGTTGC CGAGATCGCC GCGCTCACGC AGCCTGCAGC GATCCACTGG TGCGATGGCA GCCAGGCCGA ATATGACCAG CTGTGCCAGC AACTGGTCGC CGCCGGCACC TTCCGCAAGC TCGACGAGGC CAAGCGCCCG AACAGCTACC TCGCCTGGTC GGACCCGAGC GACGTGGCGC GCGTCGAAGA CCGCACCTAC ATCTGCAGCG ACCGCAAGGA AGACGCCGGC CCGACCAACA ACTGGATGGA ACCGGCGCAG ATGCGCAGCC TGCTGGAAAG CGGCGACGCC GCGCTGTTCC GCGGCGCGAT GCGTGGCCGC ACGATGTACG TGGTGCCGTT CAGCATGGGC CCGCTGGGCT CGCCGATCGC CCACATCGGC GTCGAACTCT CCGACAGCCC GTACGTGGCG GTCAACATGC GCATCATGAC CCGCATGGGC CGCGCGGTTT ACGACGTGCT GGGTGTCGAC GGCGACTTCG TGCCCTGCGT GCACACCGTG GGCGCACCGC TCGAAGCCGG CCAGAAGGAC GTCACCTGGC CGTGCAACAA GACCAAGTAC ATCGTCCACT ACCCGAGCAC CCGCGAGATC TGGTCCTACG GTTCGGGCTA CGGCGGCAAC GCGCTGTTGG GCAAGAAGTG TTTCGCACTG CGCATCGCCT CGAACATGGG CCGCGACCAG GGCTGGCTGG CCGAGCACAT GCTGATCCTG GGCGTGACCT CGCCCGAGGG CAAGAAGTCG CACGTCGCCG CCGCCTTCCC GAGCGCCTGC GGCAAGACCA ACTTCGCGAT GCTGATCCCG CCGGCTGCCC TGGGCGACTG GAAGGTCACC ACCATCGGCG ACGACATCGC CTGGATCAAG CCCAGCGCCG ACGGCAAGCT GCGCGCCATC AACCCGGAAG CGGGCTACTT CGGCGTGGCC CCGGGCACCA ACTTCAAGAC CAACCCGAAC TGCATGGCGT CGCTGAACCG CGACGTCATC TTCACCAACG TCGCGCTGAC CGACGACGGT GACGTCTGGT GGGAAGGCAT GACCGACGAG CTGCCCAGCC ACCTGATCGA CTGGCAAGGC AAGGACTGGA CGCCCGAAAC CGCCCGCGGC GCCGACGGCA AGCTGCGCCC GGCTGCGCAC CCGAACGCCC GCTTCACGGT GGCCGCCACC AACAACCCGG CGCTCGACCC CGAGTGGGAC AACCCGGCCG GCGTGGCGAT CGACGCCTTC ATCTTCGGCG GCCGTCGCTC GACCACCGTG CCGCTGGTGA CCGAAGCGCG CAACTGGGTC GAAGGCGTCT ACATGGCCGC AACCATGGGC TCGGAAACCA CCGCCGCCGC TGCCGGCCAG ATGGGCGTGG TGCGCCGCGA CCCGTTCGCC ATGCTGCCGT TCACCGGCTA CAACATGAGC GACTACTTCC AGCACTGGCT GGATCTGGGC GCGCGCCTCG AAGCCGCCGA AGCCAAGCTG CCGGCGATCT ATTGCGTCAA CTGGTTCCGC AAGGGCGCCG ACGGCAAGTT CGTGTGGCCG GGTTACGGCG ACAACATGCG CGTGCTGCAG TGGATGCTGG GCCGCATCGA GGGCGAGGCC GAGGGCGAAG AACACGTCTT CGGTGTCAGC CCGCGCTACG ACGACCTGTC GTGGGACGGC ATGGAATTCA GCCAGGCCCA GTTCGAGAGC GTCATCGGCA TCGACCACGC GGCCTGGCAG CAGGAGCTGG CGCTGCACGA ACAGCTGTTC GAGCAACTCG CCCACAACCT GCCGGACGCG CTGCGCGCCA CCAAGGCCCA GATCGAAGTG CGCCTGGCTC GCTGA
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Protein sequence | MNHPAMAGVH VNAPSFVKNA KLIAWVAEIA ALTQPAAIHW CDGSQAEYDQ LCQQLVAAGT FRKLDEAKRP NSYLAWSDPS DVARVEDRTY ICSDRKEDAG PTNNWMEPAQ MRSLLESGDA ALFRGAMRGR TMYVVPFSMG PLGSPIAHIG VELSDSPYVA VNMRIMTRMG RAVYDVLGVD GDFVPCVHTV GAPLEAGQKD VTWPCNKTKY IVHYPSTREI WSYGSGYGGN ALLGKKCFAL RIASNMGRDQ GWLAEHMLIL GVTSPEGKKS HVAAAFPSAC GKTNFAMLIP PAALGDWKVT TIGDDIAWIK PSADGKLRAI NPEAGYFGVA PGTNFKTNPN CMASLNRDVI FTNVALTDDG DVWWEGMTDE LPSHLIDWQG KDWTPETARG ADGKLRPAAH PNARFTVAAT NNPALDPEWD NPAGVAIDAF IFGGRRSTTV PLVTEARNWV EGVYMAATMG SETTAAAAGQ MGVVRRDPFA MLPFTGYNMS DYFQHWLDLG ARLEAAEAKL PAIYCVNWFR KGADGKFVWP GYGDNMRVLQ WMLGRIEGEA EGEEHVFGVS PRYDDLSWDG MEFSQAQFES VIGIDHAAWQ QELALHEQLF EQLAHNLPDA LRATKAQIEV RLAR
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