Gene Lcho_3932 details

Gene Information

• Locus tag: Lcho_3932
• Symbol: rpsE
• ID: 6163726
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 4413252
• End bp: 4413770
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 641666710
• Product: 30S ribosomal protein S5
• Protein accession: YP_001792951
• Protein GI: 171060602
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 50
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCTAAGT TTCAACCCAA GGTCGCTGAC GAAGGTCGTG ACGATGGGAT GCGCGAGAAG 
ATGATCCAGG TGAACCGCGT GACCAAGGTG GTCAAGGGCG GTCGGATCAT GGCTTTTGCA 
ACGCTGACCG TGGTCGGTGA TGGCGATGGT CGCGTCGGCA TGGGCAAGGG CAAGGCACGT 
GAAGTGCCGG TCTCGGTCCA GAAGGCGATG GAGTCTGCTC GTCGCGGTCT GGTCAAGATC 
CCGCTGCGCA ACGGCACGGT CCCGCACAAC GCGACCGGCG AACATGGCGC GGCAAAGGTC 
CTGCTGGCGC CCGCGCCGGC CGGTACCGGC ATCATTGCCG GTGGCCCGAT GCGCGCTGTC 
TTTGAAGTGC TGGGTATCAC CGACATCGTG GCCAAGAGCC TCGGCTCGTC GAACCCGTAC 
AACATGGTTC GCGCCACGTT CGACGCCTTG TCGCGCATGA CCACCGCTTC GCAAGTGGCG 
GCCAAGCGTG GTCTGACGAT CGAACAGATC TTCAACTGA 

 

Protein sequence

MAKFQPKVAD EGRDDGMREK MIQVNRVTKV VKGGRIMAFA TLTVVGDGDG RVGMGKGKAR 
EVPVSVQKAM ESARRGLVKI PLRNGTVPHN ATGEHGAAKV LLAPAPAGTG IIAGGPMRAV 
FEVLGITDIV AKSLGSSNPY NMVRATFDAL SRMTTASQVA AKRGLTIEQI FN