Gene Lcho_3904 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3904 
Symbol 
ID6161791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4385913 
End bp4386473 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content69% 
IMG OID641666682 
ProductAsnC family transcriptional regulator 
Protein accessionYP_001792923 
Protein GI171060574 
COG category[K] Transcription 
COG ID[COG1522] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.0974584 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGAAA CGCCGTTGCC GCAATTCTCG GATCAAGGGA AAACCCGAGC CCCTGACGCA 
GGCCTCGCCG AGGGCCGCGC CGGCGGTCTC GACCGGTTTG ACATCGCGAT CCTCGCGGAG 
TTGCAGCGCG ATGCCCGTCT GTCCAACGCC GAGCTGGCGG CACGCATCGG CTTGTCGGCC 
GCGCCGACGT GGCGGCGCGT GCGCTGGCTC GAGGAGCAGG GCTACATCAC CGGCTACCGG 
GCCGAGATCG ACCGCCGCAA GATCGGCCTG GGCGTGCTCG CCTTCGTGCG CATCGACACC 
GAGCGCAACA ACGCCGAGGC CACGCTGACC CTCGAGGCCC TGATCCGCGC CCTGCCCGAG 
GTGGTCACCT GCCACTACAT CAGCGGCACC GGCACCTTCG AGCTGCACGT GGTGGCCACC 
GACCTCGACG CCTATTCGCG CTGGGTGCGC GACACCTTGT TCAGGCTGCC CAACGTCAAG 
GACATGCACA CCAGCTTCTC GCTCGGCGAG GTCAAGGCGG GCTCGGTCCT GCCGCTGAGC 
CATCTGCGTC CGCCGGGCTG A
 
Protein sequence
MKETPLPQFS DQGKTRAPDA GLAEGRAGGL DRFDIAILAE LQRDARLSNA ELAARIGLSA 
APTWRRVRWL EEQGYITGYR AEIDRRKIGL GVLAFVRIDT ERNNAEATLT LEALIRALPE 
VVTCHYISGT GTFELHVVAT DLDAYSRWVR DTLFRLPNVK DMHTSFSLGE VKAGSVLPLS 
HLRPPG