Gene Lcho_3895 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3895 
Symbol 
ID6162054 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4375550 
End bp4376098 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content68% 
IMG OID641666673 
Producttwo component Fis family transcriptional regulator 
Protein accessionYP_001792914 
Protein GI171060565 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG4567] Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGCGC CATCCGTTGA ACACCCCAAC CTGCTGCTGG CCGACGACGA TCCGGTGTTC 
TGCCAGGTGC TGTCGCGGGC GCTGACCGCA CGCGGCTACG TCGTCGACAT GGCCCACGAC 
GGTGCGTCGT CGCTGCGCCT GATCGACGAC CTGAACCCCG AATACGCGAT CGTCGACCTG 
CGCCTGCCCG ACATGTCCGG GCTGCGGCTG GTCGAGCGGC TCAAGGCGGT CGACGACAAC 
ACCAAGATCA TCGTGCTGAC CGGCTTCGGC AGCATCGCCA CCGCGATCGA GGCCATCAAG 
CGCGGCGCCA CCCACTACCT GACCAAGCCG ACCAGCGTCG ACGACATCGT GGCCGCGTTC 
GACCACAAGC TGCAGCCGAT CGACGCGACG CCGGCCGACA AGCCGCTGTC GGTCGACCGC 
ATCGAGTGGG AGCACATCCA GCGCGTGCTG ACCGATTGCG ACGGCAACAT CTCGGCCACC 
GCGCGCGCGC TGCGCATGCA CCGGCGCACG CTGCAGCGCA AGCTGAGCAA ACACCCGCCG 
GCGCACTGA
 
Protein sequence
MHAPSVEHPN LLLADDDPVF CQVLSRALTA RGYVVDMAHD GASSLRLIDD LNPEYAIVDL 
RLPDMSGLRL VERLKAVDDN TKIIVLTGFG SIATAIEAIK RGATHYLTKP TSVDDIVAAF 
DHKLQPIDAT PADKPLSVDR IEWEHIQRVL TDCDGNISAT ARALRMHRRT LQRKLSKHPP 
AH