| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3867 |
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| Symbol | rpoB |
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| ID | 6161530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4338555 |
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| End bp | 4342682 |
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| Gene Length | 4128 bp |
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| Protein Length | 1375 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641666641 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001792886 |
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| Protein GI | 171060537 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAAAG CTTCCCCCTA CAGCTATACC GAGCGCAAGC GCATTCGCAA GAGTTTCGGC
AAGCGCGCAA GTGTGCTCAA CGTGCCCTAT CTGCTGACGA TGCAGAAGGA CAGCTACGTT
GCCTTCCTGC AAAAGGACGT CCCGCCCAAA CAGCGCAAGC CTGAAGGCCT GCAAGCGGCT
TTCATCTCGG CGTTCCCGAT TGTTTCGCAC AACGGGTTCG TGGAGATGAA GTTCATCGAA
TTCAACATCG CCAAACCGCC GTTCGACGTG CGCGAATGCC AGCAGCGCGG CCTGACCTTT
GCCGCCGCCG TGCGCGCCAA GCTGCAGATG ATCGTCTATG ACCGCGAGGC CTCGACCTCG
CAGTCGAAGG TGGTCAAGGA GATCAAGGAG CAGGAGGTCT ACATGGGCGA AGTGCCCTTG
ATGACCGACT ACGGCTCCTT CATCGTCAAC GGCACCGAGC GCGTCATCGT CTCGCAGCTG
CACCGCTCGC CGGGCGTGTT CTTCGAGCAC GACAAGGGCA AGACTCACAG CTCGGGCAAG
CTGCTGTTCT CGGCGCGGAT CATTCCGTAC CGCGGATCGT GGCTGGACTT CGAGTTCGAC
CCGAAGGACA TCCTGTTCTT CCGCGTCGAC CGCCGCCGCA AGATGCCGGT GACGATCCTG
CTCAAGGCGA TCGGCCTGAA CCCTGAGCAG ATCCTGGCGC ACTTCTTCAA GTTCGACAAT
TTCCGCCTGA TGGACACCGG CGCCCAGATG GAGTTCGTCG CCGAGCGCAT CAAGGGCGAG
GTGGCCCGCT TCGACATCAC CGACAAGAAC GGCAACGTCG TCGTCGAGAA GGACAAGCGC
ATCACCGCCA AGCACATCCG CTCGCTGGAC GCCTCGGGCA CGCAGTACAT CAGCGTGCCG
GAAGACTTCC TGGTCGGCCG TGTCGTGGCG CGCAACATGG TCGACGCCGA CACCGGCGAG
ATCGTTGCCA AGGCCAATGA CGAGCTGACC GAGCTGCTGC TCAAGAAGCT GCGCAGTGCC
GGCATCAAGG ATCTGCAGTG CCTGTACACC AATGAGCTGA ACCAGGGCGC CTTCATCAGC
CAGACGCTGG CGTCGGATGA AACCGCCGAC CAGCTCGCCG CGCGCGTGGC CATCTACCGC
ATGATGCGCC CCGGCGAGCC GCCGACCGAA GACGCCGTCG AGGCGCTGTT CCATCGGCTG
TTCTACAACG CCGACACCTA CGACCTGTCG CGCGTGGGCC GCATGAAGTT CAACGCCCGC
GTGGGCCGCG AGGCTTCCGA AGGCGCGATG ACGCTGGCCA ACGACGACAT CCTCGATGTC
GTCAAGATCC TGGTCGACCT GCGCAACGGC AACGGCGAAG TCGACGACAT CGACCACCTC
GGCAACCGCC GCGTGCGTTG CGTGGGCGAA CTGGCCGAAA ACCAGTACCG CTCGGGCCTG
GCGCGGATCG AGAAGGCTGT CAAGGAACGC CTCGGCCAGG CCGAGACCGA GTCCCTGATG
CCGCACGACC TGATCAACTC CAAGCCGATT TCCGCGGCGC TCAAGGAGTT CTTCGGTGCG
TCGCAGCTGT CGCAGTTCAT GGACCAGACC AACCCGCTGT CGGAGATCAC GCACAAGCGT
CGTGTCTCGG CACTGGGCCC GGGCGGCCTG ACCCGCGAGC GCGCCGGCTT CGAGGTGCGC
GACGTGCACC CGACCCACTA CGGCCGCGTC TGCCCGATCG AGACGCCGGA AGGCCCGAAC
ATCGGCCTGA TCAACTCGCT GGCGCTGTTC GCCCGCCTGA ACGACTACGG CTTCCTCGAG
ACGCCGTATC GCCGGGTCAA GGACGGCATC GCGACGACGC AGATCGACTA CCTGTCGGCG
ATCGAAGAAG GCAAGTACGT GATCGCGCAG GCCAATGCCT CGCTCGACGC CGACAGCCGC
CTGACCGACG AGCTGGTCTC GGCACGTGAA AAGGGCGACT CGGTGCTGAC GCAGCCCGAG
CGCATCCAGT ACATGGACGT GGCGCCGACG CAGATCGTGT CGGTGGCGGC GTCGCTGGTG
CCGTTCCTGG AGCACGACGA CGCGAACCGC GCGCTGATGG GCGCCAACAT GCAGCGTCAG
GCCGTGCCGG TCCTGCGCCC TGAAAAGGCG CTGGTCGGTA CCGGTGTCGA GCGCGTGGCC
GCGGTCGACT CGGGCACGGT GGTGACGGCG CGCCGCGGCG GCATCGTCGA CTACATCGAC
ACCAACCGCA TCGTGATCCG CGTCAACGAC GCCGAGACGG TGGCCGGTGA AGTCGGCGTC
GACATCTACA ACCTGATCAA GTACCACCGT TCGAACCAGA ACACCAACAT CCACCAGCGT
CCGATCGTCA GCCGCGGTCA CCTGGTCGGT GCCGGCGACG TGATCGCCGA CGGTGCGTCG
ACCGACCTGG GTGAACTGGC GCTGGGCCAG AACATGCTGG TCGCGTTCAT GCCGTGGAAC
GGCTACAACT TCGAAGACTC GATCCTGATC TCCGAACGCG TGGTGGCCGA AGACCGCTAC
ACCTCGATCC ACATCGAGGA ACTGGTGGTG ATGGCGCGTG ACACCAAGCT GGGCCCCGAG
GACATCACCC GCGACATCCC GAACCTGTCG GAGGCGCAGC TGTCGCGTCT GGACGAGTCG
GGCATCGTCT ACGTCGGTGC CGAGGTGAAC CCGGGCGACG TGCTGGTCGG CAAGGTCACG
CCCAAGGGCG AGACCACGCT GACGCCGGAA GAGAAGCTGC TGCGCGCGAT CTTCGGCGAG
AAGGCCTCGG ACGTGAAGGA CACCTCGCTG CGCGTGGATC AAGGCACGAG CGGCACCGTC
ATCGACGTGC AGGTCTTCAC CCGTGAAGGC ATCACCCGCG ACAAGCGCGC CCAGCAGATC
ATCGACGACG AGCTCAAGCG CTTCCGCCTC GACCTGAACG ACCAGCTGCG CATCGTCGAA
GCCGACGCGT TCGACCGGAT CGAGAAGCTG CTGACCGGCA AGATCGCCAA CGGCGGCCCG
CGCAAGATCG CCAAGGGCAC GGTGATCGAC AAGGCCTACC TGACCGACGT CGAGAAGTAC
CACTGGTTCG ACATCCGTCC GGCCGAAGAC GAAGCCGCCA ACCAGCTCGA GTCGATCAAG
AACTCGCTCG AGCAGACGCG TCACAGCTTC GACCTGGCCT TCGAAGAAAA GCGCAAGAAG
CTCACGCAGG GCGATGAACT GCCGGCCGGC GTGCTGAAGA TGGTCAAGGT GTACCTGGCC
GTCAAGCGCC GCCTGCAGCC GGGCGACAAG ATGGCCGGCC GTCACGGCAA CAAGGGCGTG
GTCTCCAAGA TCACCCCGAT CGAGGACATG CCGTACATGG CCGACGGTAC CCCCGCCGAC
ATCGTGCTCA ACCCGCTGGG CGTGCCTTCG CGGATGAACG TGGGTCAGGT GCTGGAAGTC
CACCTCGGCT GGGCCGGCAA GGGCATCGGC CAGCGCATCG GCGACATGCT GCAAGGCGAG
GCCCGCGTGG CCGAGCTGCG CAAGTTCTTC GACGAGCTCT ACAACCAGTC GGGCGGCAAG
TCCGAATCGC TGGATGACCT GAGCGACGAG GACGTCATCG AGATGGCCGG CAACCTGTCC
AACGGCGTGC CGTTCGCCAC GCCGGTGTTC GACGGTGCCA AGGAAGAAGA GATCCGCGGC
ATGCTCAAGC TGGCGTACCC GGACGACATC GCCGCACGCA AGGGCCTGAC GCCCACGCGC
ACGCAGGCCT GGCTGTGCGA CGGCCGCACC GGCGAGCAGT TCGAGCGCCC GGTCACGGTC
GGCTACATGC ACGTGCTGAA ACTGCACCAC CTGGTCGACG ACAAGATGCA CGCCCGCTCG
ACCGGCCCGT ACTCGCTCGT CACCCAGCAG CCGCTGGGCG GCAAGGCGCA GTTCGGTGGT
CAGCGCTTCG GTGAAATGGA AGTGTGGGCA CTTGAAGCGT ACGGCGCGGC CTATGTGCTG
CAGGAGATGC TCACGGTGAA GTCCGATGAC GTCAACGGCC GTACCAAGGT CTACGAAAGC
ATCGTCAAGG GTGAACATTC GATCGACGCG GGCATGCCCG AATCGTTCAA TGTGCTGGTC
AAGGAAATTC GCTCGCTCGG TATCGACATC GAGCTCGAGC GCAACTAA
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| Protein sequence | MAKASPYSYT ERKRIRKSFG KRASVLNVPY LLTMQKDSYV AFLQKDVPPK QRKPEGLQAA
FISAFPIVSH NGFVEMKFIE FNIAKPPFDV RECQQRGLTF AAAVRAKLQM IVYDREASTS
QSKVVKEIKE QEVYMGEVPL MTDYGSFIVN GTERVIVSQL HRSPGVFFEH DKGKTHSSGK
LLFSARIIPY RGSWLDFEFD PKDILFFRVD RRRKMPVTIL LKAIGLNPEQ ILAHFFKFDN
FRLMDTGAQM EFVAERIKGE VARFDITDKN GNVVVEKDKR ITAKHIRSLD ASGTQYISVP
EDFLVGRVVA RNMVDADTGE IVAKANDELT ELLLKKLRSA GIKDLQCLYT NELNQGAFIS
QTLASDETAD QLAARVAIYR MMRPGEPPTE DAVEALFHRL FYNADTYDLS RVGRMKFNAR
VGREASEGAM TLANDDILDV VKILVDLRNG NGEVDDIDHL GNRRVRCVGE LAENQYRSGL
ARIEKAVKER LGQAETESLM PHDLINSKPI SAALKEFFGA SQLSQFMDQT NPLSEITHKR
RVSALGPGGL TRERAGFEVR DVHPTHYGRV CPIETPEGPN IGLINSLALF ARLNDYGFLE
TPYRRVKDGI ATTQIDYLSA IEEGKYVIAQ ANASLDADSR LTDELVSARE KGDSVLTQPE
RIQYMDVAPT QIVSVAASLV PFLEHDDANR ALMGANMQRQ AVPVLRPEKA LVGTGVERVA
AVDSGTVVTA RRGGIVDYID TNRIVIRVND AETVAGEVGV DIYNLIKYHR SNQNTNIHQR
PIVSRGHLVG AGDVIADGAS TDLGELALGQ NMLVAFMPWN GYNFEDSILI SERVVAEDRY
TSIHIEELVV MARDTKLGPE DITRDIPNLS EAQLSRLDES GIVYVGAEVN PGDVLVGKVT
PKGETTLTPE EKLLRAIFGE KASDVKDTSL RVDQGTSGTV IDVQVFTREG ITRDKRAQQI
IDDELKRFRL DLNDQLRIVE ADAFDRIEKL LTGKIANGGP RKIAKGTVID KAYLTDVEKY
HWFDIRPAED EAANQLESIK NSLEQTRHSF DLAFEEKRKK LTQGDELPAG VLKMVKVYLA
VKRRLQPGDK MAGRHGNKGV VSKITPIEDM PYMADGTPAD IVLNPLGVPS RMNVGQVLEV
HLGWAGKGIG QRIGDMLQGE ARVAELRKFF DELYNQSGGK SESLDDLSDE DVIEMAGNLS
NGVPFATPVF DGAKEEEIRG MLKLAYPDDI AARKGLTPTR TQAWLCDGRT GEQFERPVTV
GYMHVLKLHH LVDDKMHARS TGPYSLVTQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYVL
QEMLTVKSDD VNGRTKVYES IVKGEHSIDA GMPESFNVLV KEIRSLGIDI ELERN
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