| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3853 |
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| Symbol | |
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| ID | 6161206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4320088 |
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| End bp | 4321839 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666626 |
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| Product | sodium/hydrogen exchanger |
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| Protein accession | YP_001792872 |
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| Protein GI | 171060523 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0569] K+ transport systems, NAD-binding component
[COG4651] Kef-type K+ transport system, predicted NAD-binding component |
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| TIGRFAM ID | [TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGGCG AGTCGGGGCT CTGGTACAAC ACCCGTCGCA TGGAACACAA CATCTCGCTC
ATCACCACGC TGGCCGCCGG CTTCGGCATC GCCCTGATCC TGGGGTTCAT CGCCGAGCGC
ATCAAGATGC CGGCGCTGGT GGGCTACCTG GTGGCGGGCA TCCTGATCGG CCCGGCCACG
CCGGGCTTCG TGGCCGATGT CGGCATCGCG GCGCAGCTGT CGGAGATCGG CGTGATGTTG
CTGATGTTCG GCGTCGGGCT GCATTTTTCG CTCGACGACC TGCTGGCGGT CCGGCGCATC
GCGGTGCCCG GCGCGGTGGT GCAGATGGGT TTCGCGACGG CGCTGGGCAT GGCGCTGGCC
TCGTGGTGGG GCTGGAGCCT GGGCAACGGG CTGATCTTCG GGCTGTCGCT GTCGTGCGCG
AGCACGGTGG TGCTGCTCAA GGCGCTCGAG GCGCGCGGCG TGCTCGAGAC CATGAACGGC
CGCATCGCGG TCGGCTGGCT GGTGGTGGAA GACCTCGCCA CCGTGCTGGT GCTGGTGCTG
ATGCCGCCGC TGGCCGGCGT GCTGGGCGGC ACGGTCGATC CGGCCGACAG CGCCGGCCCG
CTCTGGATCA CGATCGGCAA GACCTTGCTG CAGGTCTCTG CCTTCATCGC GCTGATGCTG
ATCGCCGGGC GCCGCGTGCT GCCCTGGCTG CTGTCGCACA TCGCGCGCAC CGGCTCGCGC
GAGCTGTTCA CGCTGTCGGT GATCTCGGCG GCGATCGGCA TCGCCTACGG CGCGGCGGCG
CTGTTCGGCG TGTCGTTCGC GCTCGGCGCC TTCTTCGCCG GCATGGTGAT GCGCGAATCC
GAGTTCAGCC ACCGCGCCGC CGAAGAATCC CTGCCGTTGC GCGATGCCTT CTCGGTGCTG
TTCTTCGTCT CGGTGGGCAT GCTGTTCGAG CCGGCGATCC TGGTCGAGCA GCCCGGGCGC
GTGCTCGGCG TGGTCGCCAT CATCATCGTC GGCAAGTCGA TCGCGGCGCT GGCGCTGACG
CTGGCGTTCC GCTACCCGCT CAACACCGCG CTGACGGTGG CGGCCAGCCT GGCGCAGATC
GGCGAGTTCT CGTTCATCCT GGCCGGGCTG GGCATGGCGC TCGGCCTGCT GCCGGCCGAG
GGCATGAGCC TGGTGCTGGC CGGCGCGCTG ATCACGATCG CGCTCAATCC CTTCCTGTTC
GCCGCCATCG CGCCGTTGCG CCGCTGGCTG CTCGGGCGCT CCGAACTGGC GCGCAGCCTG
GAGCGGCGCG AGGACCCCTA TGCCGAGCTG CCGATGAGCA CCGAGCGCAA GTTCCTCGCC
GGCCAGGTGG TGCTGGTGGG CTACGGACGG CTCGGGCGCC GCATCGCCGA GGCGCTGGCG
CAGCGCGGCA TCCCCTACGT GGTGGCCGAG GAGAACCGCG AGCAGGTCGA GCGCCTGCGC
AACCAGGGCA TCGCCGCGGT GTCGGGCAAT GCCGCCGATC CGGCGGTGCT GATCCAGGCC
CACATCGCCG ACGCCTCGAT GCTGGTGGTG ACGATTCCCG ATCCGGTCGA CGTCCGGCTG
ATGGCCGACA CCGCCCGCAC CCTCAACCCG GACATCGAGA TCGTGCTGCG CAGCGACAGC
GAGGACGAGT CCGAACTGCT GCGCAAGCAG GGCATCGGCA CCGTGTTCTT CGGCGAGGAG
GAACTCGCCC GCGGCATCAC CGGCCACGTG CTGCAGCGCT TCGCGCCGCG GCCGGGCGCG
CTGGTGTCCT GA
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| Protein sequence | MAGESGLWYN TRRMEHNISL ITTLAAGFGI ALILGFIAER IKMPALVGYL VAGILIGPAT
PGFVADVGIA AQLSEIGVML LMFGVGLHFS LDDLLAVRRI AVPGAVVQMG FATALGMALA
SWWGWSLGNG LIFGLSLSCA STVVLLKALE ARGVLETMNG RIAVGWLVVE DLATVLVLVL
MPPLAGVLGG TVDPADSAGP LWITIGKTLL QVSAFIALML IAGRRVLPWL LSHIARTGSR
ELFTLSVISA AIGIAYGAAA LFGVSFALGA FFAGMVMRES EFSHRAAEES LPLRDAFSVL
FFVSVGMLFE PAILVEQPGR VLGVVAIIIV GKSIAALALT LAFRYPLNTA LTVAASLAQI
GEFSFILAGL GMALGLLPAE GMSLVLAGAL ITIALNPFLF AAIAPLRRWL LGRSELARSL
ERREDPYAEL PMSTERKFLA GQVVLVGYGR LGRRIAEALA QRGIPYVVAE ENREQVERLR
NQGIAAVSGN AADPAVLIQA HIADASMLVV TIPDPVDVRL MADTARTLNP DIEIVLRSDS
EDESELLRKQ GIGTVFFGEE ELARGITGHV LQRFAPRPGA LVS
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