Gene Lcho_3851 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3851 
Symbol 
ID6162626 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4318727 
End bp4319731 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content68% 
IMG OID641666624 
ProductYVTN beta-propeller repeat-containing protein 
Protein accessionYP_001792870 
Protein GI171060521 
COG category[S] Function unknown 
COG ID[COG3391] Uncharacterized conserved protein 
TIGRFAM ID[TIGR02276] 40-residue YVTN family beta-propeller repeat 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCATCCC ATCACTCGAA GCCCTTCGCC ACCCTCTGCA ACTTCTCCAG CCTCGCCGCA 
GCCGCCGTGC TGGTGCTGGC CGGTGCCTCG GCCCAGGCCC AGGGCGTCGC CTACGTGTCG 
AGCGAGAAGG ACAACACGCT GGCCGTGCTC GACCTGGCGT CGATGAGCGT CACCGGCACG 
ATCGCGACCT GCAAGCGCCC GCGCCACATG CAGCTCACGC CCGATCGCAA GCAGCTGATG 
GTGGCCTGCG GCGACTCGGG CCAGGCCGAC GTGATCGACA TCGCCACCCG CAAGTCGGTC 
GGCAAGGTCG ACCTGGGCGA AGACCCCGAG ATCTTCGACC TCTCGCCCGA CGGCAAGACG 
CTCTACGTCA GCAACGAGGA AGACGGCGAA CTCGGCGTGG TCGACCTCGC CAGCGGCAAG 
CGCACCAAGA GCATCGAGGT CGGCAAGGAG CCCGAAGGTG TCAAGGTCAG CCCCGACGGC 
AAGACCGTCT ACGTGACCTC CGAGGTGGCC AGCCTGGTGC ACGTGATCGA CGTCGCCAGC 
GGCAAGGTGA CCAAGAACAT CAAGGCCGGC AAGCGCCCGC GGCGTTTTGC GATGACGCCC 
GACGGCGCGC AGCTGTGGGT CACCAACGAG CTGGCCGCCA GCGTGACGGT GATCAGCACC 
CGCGATCACA GCGTGCTCGA CACCATCAAG TTCACCGTCA AGGGCGCGCG CGCCACCGAC 
ATCACGCCGG TGGGCATCGA GATCAGCGCC GACGGCAAGC GGGCGTTCGT CGGCCTGGGC 
AAGGCCAACC ACGTGGCGTT CGTCGACGTC GCCACGCGCA AGACCACCGA CCTGGTGCTG 
GCCGGCAAGC GCGCCTGGGG CCTGGGCCTG AACAAGGCGC AGGACCGGCT GTACGTCGCC 
AACGGCCTGT CGGACGACCT GACCATCATC GACGTCGGCG CCGCCAAGGC GATCAAGAGC 
GTGGCCGTCG GCCGCGTGCC GCACAGCGTG GTGGTGGTCG AGTGA
 
Protein sequence
MPSHHSKPFA TLCNFSSLAA AAVLVLAGAS AQAQGVAYVS SEKDNTLAVL DLASMSVTGT 
IATCKRPRHM QLTPDRKQLM VACGDSGQAD VIDIATRKSV GKVDLGEDPE IFDLSPDGKT 
LYVSNEEDGE LGVVDLASGK RTKSIEVGKE PEGVKVSPDG KTVYVTSEVA SLVHVIDVAS 
GKVTKNIKAG KRPRRFAMTP DGAQLWVTNE LAASVTVIST RDHSVLDTIK FTVKGARATD 
ITPVGIEISA DGKRAFVGLG KANHVAFVDV ATRKTTDLVL AGKRAWGLGL NKAQDRLYVA 
NGLSDDLTII DVGAAKAIKS VAVGRVPHSV VVVE