| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3835 |
|---|
| Symbol | |
|---|
| ID | 6161435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4298949 |
|---|
| End bp | 4299437 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641666608 |
|---|
| Product | TraR/DksA family transcriptional regulator |
|---|
| Protein accession | YP_001792854 |
|---|
| Protein GI | 171060505 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1734] DnaK suppressor protein |
|---|
| TIGRFAM ID | [TIGR02420] RNA polymerase-binding protein DksA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.827568 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACTGA ACGACGCCAT CCGCTCGGCC AACAAAGCCG ACCCGAAACT CGCCAACGCC
TGGAAGAACA AGTCCGGCCG CGAGCTGAGC GTGGCCGAGT TGCTCTCGAT GCCCGAGAGC
GAATACATGA ACGAGAAGCA GCTCGAATTC TTCCGCTCGA TCCTCGAGCA GCAGAAGAAC
GACCTGCTGA TGAATGCCGG CGAGACCACC GAGCACCTGC GCGAAGACAC CACGATCGTG
CCCGATCCGG CAGACCGCGC CACGATCGAG GAAGAGCATG CCCTCGAGCT GCGCACGCGA
GACCGCGAAC GCAAGCTGCT GAAGAAGATC TCGCAGGCGC TCGCCAGCAT CGAATCTGGT
GACTACGGTT ACTGTGATGA AACAGGTGAA CCGATCGGTC TGGGGCGTTT GCTCGCCCGA
CCCACCGCTA CACTCTCGCT GGAAGCGCAA CAGCGCCGGG AACTCAAACA AAAACTGTTC
GGCGACTGA
|
|---|
| Protein sequence | MPLNDAIRSA NKADPKLANA WKNKSGRELS VAELLSMPES EYMNEKQLEF FRSILEQQKN
DLLMNAGETT EHLREDTTIV PDPADRATIE EEHALELRTR DRERKLLKKI SQALASIESG
DYGYCDETGE PIGLGRLLAR PTATLSLEAQ QRRELKQKLF GD
|
|---|
| |