| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3819 |
|---|
| Symbol | |
|---|
| ID | 6160443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4283942 |
|---|
| End bp | 4285576 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641666592 |
|---|
| Product | cytochrome c oxidase, subunit I |
|---|
| Protein accession | YP_001792838 |
|---|
| Protein GI | 171060489 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.247666 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCAG TTCTCCATCC CGGTGGCCAT GCGCATGACG ACAGTCATGG CCATGACGAC
CACCACCACG CTCCGCACGG CTGGCGCCGC TGGGTCTTCG CGACCAACCA CAAGGACATC
GGCACGCTGT ACCTGCTGTT CGCCTTCACG ATGCTGATGA TCGGCGGCGT GCTGGCGCTG
CTGATCCGCC TCGAGCTGTT CCAGCCCGGG CTGCAGTTCG TCAACCCCGA GCTGTTCAAC
CAGTTCACCA CGATGCACGG GCTGATCATG GTGTTCGGCG CGATCATGCC GGCCTTCGTC
GGCTTCGCGA ACTGGATGCT GCCGCTGCAG ATCGGTGCCG CGGACATGGC CTTCGCGCGC
ATGAACAACT TCAGCTTCTG GCTGATGATC CCGGCCGCGC TCATGCTGGT GGCGAGCTTC
TTCATGCCCG GCGGCGCACC CGCTGCCGGC TGGACGCTCT ACGCGCCGCT GACGCTGCAG
ATGGGCCCGT CGATGGATGC CGGCATCTTC GCGATGCACA TCCTGGGCGC CTCGTCGATC
ATGGGCTCGA TCAACATCAT CGTCACGGTG CTCAACATGC GCGCACCGGG CATGACGCTG
ATGAAGATGC CGATGTTCGC CTGGACCTGG CTGATCACCG CCTACCTGCT GATCGCCGTG
ATGCCGGTGC TCGCCGGCGC GATCACGATG ACGCTGACCG ACCGCCACTT CGGCACCGCC
TTCTTCAACC CCGCAGGCGG CGGCGATCCG ATCATGTACC AGCACATCTT CTGGTTCTTC
GGTCACCCCG AGGTCTACAT CATGATCTTG CCGGCCTTCG GCATCATCAG CCAGATCGTG
CCGGCATTCG CCCGCAAGCG CCTGTTCGGC TACGCCTCGA TGGTCTACGC GACCGCCTCG
ATCGCGATCC TGTCGTTCAT GGTCTGGGCC CACCACATGT ACACGACCGG CATGCCGCTG
ACCGGCCAGC TGTTCTTCAT GTACGCGACG ATGCTGATCT CGGTGCCCAC CGGCGTGAAG
GTCTTCAACT GGGTGGCCAC GATGTGGCGC GGCTCGATGA CCTTCGAGAC CCCGATGCTG
TGGGCCGTGG GCTTCATCTT CGTGTTCTCG ATGGGCGGCT TCACCGGCCT GATCCTGTCG
ATGGCGCCGA TCGACATCCA GCTGCAGGAC ACCTACTACG TGGTGGCGCA CTTCCACTAC
GTGCTGGTGG CCGGTTCGCT GTTCGCGATG TTCGCCGGCG TCTACTACTG GGGCCCGAAG
TGGACCGGCG TGATGTACTC CGAGACGCGC GGCAAGATCC ACTTCTGGGG CTCGCTGATC
ACGTTCAACA TCACGTTCTT CCCGATGCAC TTCCTCGGCC TGGCCGGCAT GCCGCGCCGT
TACGCCGACT ACCCGATGCA GTTCGCCGAC TTCAACGCGA TCGCGTCGGT GGGCGGCCTG
ACCTTCGGGC TGATGCAGGT CTACTTCTTC GTGTTCGTCG TGATCCCGAT GATGCGCGGC
ATCGGCCCCA AGGCGCCGCA GAAGCCCTGG GAAGGTGCTG AAGGACTGGA ATGGGAAGTG
CCGTCGCCGG CGCCCTTCCA CACCTTCGAG ACCCCGCCCA AGCTCGATGC CACCGCCACC
CGCGTGATCG GCTGA
|
|---|
| Protein sequence | MSAVLHPGGH AHDDSHGHDD HHHAPHGWRR WVFATNHKDI GTLYLLFAFT MLMIGGVLAL
LIRLELFQPG LQFVNPELFN QFTTMHGLIM VFGAIMPAFV GFANWMLPLQ IGAADMAFAR
MNNFSFWLMI PAALMLVASF FMPGGAPAAG WTLYAPLTLQ MGPSMDAGIF AMHILGASSI
MGSINIIVTV LNMRAPGMTL MKMPMFAWTW LITAYLLIAV MPVLAGAITM TLTDRHFGTA
FFNPAGGGDP IMYQHIFWFF GHPEVYIMIL PAFGIISQIV PAFARKRLFG YASMVYATAS
IAILSFMVWA HHMYTTGMPL TGQLFFMYAT MLISVPTGVK VFNWVATMWR GSMTFETPML
WAVGFIFVFS MGGFTGLILS MAPIDIQLQD TYYVVAHFHY VLVAGSLFAM FAGVYYWGPK
WTGVMYSETR GKIHFWGSLI TFNITFFPMH FLGLAGMPRR YADYPMQFAD FNAIASVGGL
TFGLMQVYFF VFVVIPMMRG IGPKAPQKPW EGAEGLEWEV PSPAPFHTFE TPPKLDATAT
RVIG
|
|---|
| |