| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3688 |
|---|
| Symbol | |
|---|
| ID | 6160461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4124310 |
|---|
| End bp | 4125302 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641666461 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_001792707 |
|---|
| Protein GI | 171060358 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAC TCCACAAGAT CGGCCTGCTG GCCATCCTCG CGCTGCTGCT GGGCGCGCCG
CCGATGCTCA AGAGCTACGG CGTCTACCTG TTCACCTACT GGGTGGTGTT CATCATCGCC
ACCATGGGCC TGAACCTGAC GATCGGCTAC GCCGGCCAGA AATCGCTCGG CCACGCCGCC
TTCTTCGGCA TCGGCGCCTA CACGGTGGCG ATCCTGATGC AGGCCGGCAT CAGCTTCTGG
ATCGGCCTGC CGGTGGCGAT GCTCGGCTGC TTCGTGATCG GCCTGATCGT CGGCTTCCCG
GCGCTGCGGG TGCAGACCAT CTACCTGGCG TTCGCGACGC TCGGCTTCAA CACCGCCGTC
TGGCTGGTGA TGCGCAACGA GGAGTGGCTG ACCGGCGGCA CCTTCGGCAT CAACAACATC
GCGCGGCCGA GCCTGTTCGG CATCAGCCTC GACGGCAACC TGGCGTACTA CTACTTCGTG
CTGGCGGTGG CCGTCATCCT CGGCGCACTG CTGTTCGGCC TGCTGCGATC GCCGTGGGGC
AAGGCCTTCA CCGCCTTGCG CGACAACCCG ATCCGCGCCG AGAGCCTGGG CATCAACGTG
CAGAACTACA CCCTGCTGGC GTTCGCGATC GGTGCGGTCT ATGCCGGTGT GGCCGGTGCG
CTGTTCGCCA GCCTGGTGCA GTTCATCGAT CCGGCGCCGT TCACCGTGGG CGCCTCGATC
ATGATGTACC TGATGGTGGT GCTGGGCGGC CTGGGCTACT TCTTCGGCCC GGTGCTGGGC
GCGGCGGTCG GCGTGCTGCT GCCCGAATGG ATGCGCGACC TGAAGGACTG GTACCTGTTC
GCCTTCGGCA GCGTGGTGAT CCTGCTGATG CTGTGGCTGC CCGACGGGCT GCTCTCCATC
CCCGACCGCA TCCGCGCCCG CCGACTCTCG CGCGAGGCCT CGGCCGCACG CGCCGCTGCC
GCCGCCACGG CGGTCGAAGG AACTCAGCCA TGA
|
|---|
| Protein sequence | MKTLHKIGLL AILALLLGAP PMLKSYGVYL FTYWVVFIIA TMGLNLTIGY AGQKSLGHAA
FFGIGAYTVA ILMQAGISFW IGLPVAMLGC FVIGLIVGFP ALRVQTIYLA FATLGFNTAV
WLVMRNEEWL TGGTFGINNI ARPSLFGISL DGNLAYYYFV LAVAVILGAL LFGLLRSPWG
KAFTALRDNP IRAESLGINV QNYTLLAFAI GAVYAGVAGA LFASLVQFID PAPFTVGASI
MMYLMVVLGG LGYFFGPVLG AAVGVLLPEW MRDLKDWYLF AFGSVVILLM LWLPDGLLSI
PDRIRARRLS REASAARAAA AATAVEGTQP
|
|---|
| |