| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3678 |
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| Symbol | |
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| ID | 6160426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4111705 |
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| End bp | 4113432 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641666451 |
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| Product | ABC transporter |
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| Protein accession | YP_001792697 |
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| Protein GI | 171060348 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4178] ABC-type uncharacterized transport system, permease and ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACAC AGGAACAACC CGGGTTCAAC GCCCGGCTGG TGCGACGTTT CATCACCATC
GCGGCGCCGT ATTTCCGCTC CGACGAGCGC TGGCGTGCCG CCGGCCTGCT GGCGCTGCTG
GTCGTGCTGC TGCTCGGCCA GACCGGCTTC AACGTGATGT TCAACCACGA GAGCGGCGAG
TTCACCTCGG CGCTCGCGGC GCGTGACGCC GACCGCTTCT GGTCGTCGAT CGAGCGCTTC
ACGCTGATCC TGATCGGCGG CGTGCCGATC TACGCGGCCT ACTACTTCGT GCGCGACACG
CTCGGCCTGC GCTGGCGCCA GTGGCTCACG CAGCACTTCC TGGATCGCTA TTTCGCCCAC
CGCGGCTACT ACCGGCTCAA CGCCATCGTC GGCATCGACA ACCCCGACCA GCGCATCGCC
GACGACGTCA ACGCCTTCAC CGGCCAGTCG CTCTACTTCA CGATGATCGT GCTGGGTGCG
CTGATCGAGC TGATCGCCTT CTCGGGCGTG CTGTGGTCGA TCTCGCAGAC GCTGGTCTAC
TTCCTGATCG CCTACGCGCT GGTCAGCAGC TTCATCGCCG CCACCGTGTT CGGGCCGCGG
CTGGTGGCGC TCAACTTCGC GCAGCTGCAG CGCGAGGCCA ACTTCCGCTT CAACCTGGTC
CGCCTGCGCG AGAACGCCGA GTCGATCGCC TTCTACGGCG GCGATGCGCG CGAGATGTCG
ACGCTGCGGC GCGTCTTCGA CGCCGTCTTC CGCAACTACC AGCGCGTGCT GCGCTGGCAG
TTCAAGCTCA ACCTGTTCCA GTACGCGCAC AAGTTCCTGA CCATCGTGCT GCCGAGCGTG
ATCATTGCCG GCGACGTGCT GTCGGGCGAG CTCGAGGTCG GCCGCGCCAT CCAGGCCGCC
GGCGCGTTTG CGGCGATCCT GAGCGCGCTG ACCGTGATCG TCGAGCACTT CGAGGCCCTG
AGCCGCTTCG GCGCCAGCAT CGACCGGCTC TACGGCTTCT CGGACATCCT CGACCAGCAG
GCCACGTTGC CGGCCGGCGA GCACGACGAC GGTGTCGGCC AGATCCACAC CGCGCCGGCT
GCCGAGCTGG CCATCGAGCA GCTCACGGTG CTGACGCCGC AGCGCGAGCA CCTGCTGATC
CGCGAGCTCA CGCTGGCCGT GCCGCCCGGC CAGGGGCTGC TGATCGTCGG CCCCAGCGGC
GGCGGCAAGA GCTCGCTGCT GCGCGTGCTG GCGGGGCTGT GGAACACCGG CTCGGGCCGC
GTGCGGCGCC CGGCCGTGGG CGAGATGCTG TTCCTGCCCC AGCACCCGTA TCTGCCGCTG
GGCGACCTGC GCTGCCAGCT GCTCTACCCG CACACCGAAC GCGAGATCTC CGACGCCGAG
CTGCTGCTCT GGCTCGACCG CGTCAACCTG CCCGCGCTGG CCGAGCGGGT CGGCGGGCTG
GGCGCCGAGC TGGACTGGGC CAAGGTGCTG TCGGTGGGCG AGCAGCAGCG CCTGGCGTTT
GCGCGTGCGC TGCTGGCCAA GCCGCGCTAC GTGCTGCTCG ACGAAGCCAC CAGCGCGCTC
GACGGCGTCA ACGAGGAGCT GCTCTACCAG CAGCTCGCCG GCCTGTCGAT CACGCCGATC
AGCGTCAGCC ACCACCCGGC CGTGCTGCGC TACCACCGGC AGGTGCTGGA TCTGCCCGGC
GACGGCAGCT GGACGCTGCA GGCCGCCGAG GGCTGGTGCC CGGGCTGA
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| Protein sequence | MTTQEQPGFN ARLVRRFITI AAPYFRSDER WRAAGLLALL VVLLLGQTGF NVMFNHESGE
FTSALAARDA DRFWSSIERF TLILIGGVPI YAAYYFVRDT LGLRWRQWLT QHFLDRYFAH
RGYYRLNAIV GIDNPDQRIA DDVNAFTGQS LYFTMIVLGA LIELIAFSGV LWSISQTLVY
FLIAYALVSS FIAATVFGPR LVALNFAQLQ REANFRFNLV RLRENAESIA FYGGDAREMS
TLRRVFDAVF RNYQRVLRWQ FKLNLFQYAH KFLTIVLPSV IIAGDVLSGE LEVGRAIQAA
GAFAAILSAL TVIVEHFEAL SRFGASIDRL YGFSDILDQQ ATLPAGEHDD GVGQIHTAPA
AELAIEQLTV LTPQREHLLI RELTLAVPPG QGLLIVGPSG GGKSSLLRVL AGLWNTGSGR
VRRPAVGEML FLPQHPYLPL GDLRCQLLYP HTEREISDAE LLLWLDRVNL PALAERVGGL
GAELDWAKVL SVGEQQRLAF ARALLAKPRY VLLDEATSAL DGVNEELLYQ QLAGLSITPI
SVSHHPAVLR YHRQVLDLPG DGSWTLQAAE GWCPG
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