| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3653 |
|---|
| Symbol | |
|---|
| ID | 6162476 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4078367 |
|---|
| End bp | 4079539 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641666426 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001792672 |
|---|
| Protein GI | 171060323 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCA CCCGCAGAAC CCTCATCGCC AGCGCCGTCG CACTCGCCGC TTTCGCATCG
CCGCTGGTCC ATGCGCAGGC CGCGCCCAAG CTCAAGGTCG GCCTGATGCT GCCCTACACC
GGCACCTTCG CCGCACTCGG CACGGCGATC GAAAACGGCT TTCGCCTGCA CGTGGCCGAG
CAGGGCGGCA AGCTCGGCGG GCGCGAGGTG GAGTTCTTCA AGGTCGACGA CGAATCCGAC
CCGTCCAAGG CCACCGACAA CGTCAACAAG CTGATCAAGC GCGACGCCGT CGACGTGCTG
ATCGGCAGCG TGCACTCGGG CGTTGCGATG GGCATGGCCA AGGTCGCCAA GGACACCGGC
ACACTGCTGA TCGTGCCCAA CGCCGGCGCC GACGCGGTGA CCGGCCCGAT GTGCGCGCCC
AACATCTTCC GCAGCTCGTT CTCGAACTGG CAGCCGGGTT ACGCGATGGG CGAGGTGATG
GCCAAGAAGG GCCACAAGAA GGTCGTCACC ATCACCTGGA AATACGCCGC CGGCGACGAG
TCGGTGCGCG GCTTCAAGGA GGCCTTCCAG AAGGCCGGCG GCGAGGTGAT CAAGGAGCTG
AACCTGCCGT TCCCGGGCGT CGAGTTCCAG GCCCTGCTGA CCGAGATCGC GGCGGCCAAG
CCCGATGCCG TCTACACCTT CTTTGCCGGT GGCGGCGCGG TCAAGTTCGT CAAGGACTAC
GCCGGTGCGG GCCTGAAGAA GAGCATCCCG CTGTACGGTG CGGGTTTCCT GACCGATGGC
ACGCTCGATG CGCAAGGCGC CGATGCCGAC GGCCTGCTGA CCACGCTGCA TTACGCCGAC
AGCCTGGCCA CGCCGCGCGA CAGCAGCTTC CGCCTGGCCT ATGCCAAGGC CTACAAGCTG
CAGCCCGACG TCTATGCGGT GCAGGGTTAC GACGCGGCGC AGATGCTGGC GGTCGGCCTG
GCAGCGGTGA AGGGTGACGT GGGCAAGAAG GCCGAGTTCG CCGCTGCCGT CGAGAAGGCG
AAGATCGACA GCCCGCGTGG CGCCTTCACC GTGTCGAAGG CGCACAACCC GGTGCAGGAC
ATCTACCTGC GCCAGGTGGT CGGCAAGGAG AACAAGACCA TCGGCGTGGC AAGCAAGGCG
CTGACCGACC CGGCCCGCGG CTGCAAGATG TGA
|
|---|
| Protein sequence | MNTTRRTLIA SAVALAAFAS PLVHAQAAPK LKVGLMLPYT GTFAALGTAI ENGFRLHVAE
QGGKLGGREV EFFKVDDESD PSKATDNVNK LIKRDAVDVL IGSVHSGVAM GMAKVAKDTG
TLLIVPNAGA DAVTGPMCAP NIFRSSFSNW QPGYAMGEVM AKKGHKKVVT ITWKYAAGDE
SVRGFKEAFQ KAGGEVIKEL NLPFPGVEFQ ALLTEIAAAK PDAVYTFFAG GGAVKFVKDY
AGAGLKKSIP LYGAGFLTDG TLDAQGADAD GLLTTLHYAD SLATPRDSSF RLAYAKAYKL
QPDVYAVQGY DAAQMLAVGL AAVKGDVGKK AEFAAAVEKA KIDSPRGAFT VSKAHNPVQD
IYLRQVVGKE NKTIGVASKA LTDPARGCKM
|
|---|
| |