| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3628 |
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| Symbol | |
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| ID | 6163225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4051841 |
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| End bp | 4054702 |
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| Gene Length | 2862 bp |
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| Protein Length | 953 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641666401 |
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| Product | valyl-tRNA synthetase |
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| Protein accession | YP_001792647 |
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| Protein GI | 171060298 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0525] Valyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0792576 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACG CCCTGACCAA ATCGTTTGAA CCCGCCCCGA TCGAAGCCAA GTGGGCCCCG
CTCTGGGAGG CCAGCGGCGC CTACCAGCCC ACGCTCGATC CGGCCAAGGC CAGCTTCTGC
ATCCAGCTGC CCCCGCCCAA CGTGACCGGC ACGCTGCACA TGGGCCACGC CTTCAACCAG
ACCATCATGG ACTCGTTGAC GCGCTACCAC CGCATGCGCG GCGACAACAC GCTGTGGGTG
CCCGGCACCG ACCACGCCGG CATCGCCACC CAGATCGTCG TCGAGCGCCA GCTGCAGGCG
CAAGGCGTGA GCCGCCACGA CCTGGGCCGC AAGAACTTCG TCGCCAAGGT CTGGGAGTGG
AAGGAGCAAT CGGGCTCGAC CATCACCACC CAGATGCGCC GCATGGGCGA CAGCGTGAGC
TGGCCGCACG AGTACTTCAC GATGGACCCG AAGCTCTCGA AGGTCGTCAC CGAGACCTTC
GTGCGGCTGT TCGACGAAGG CCTGATCTAC CGCGGCAAGC GGCTGGTGAG CTGGGATCCG
ATCCTGAAGT CGGCGGTGTC GGACCTGGAA GTCGAGAGCG AAGAAGAAGA CGGCTCGCTG
TGGCACATCC GCTATCCGGT GGATGGCTCG GATGAATCGC TGGTGGTGGC CACCACCCGT
CCCGAGACCA TGCTCGGCGA CACCGCGGTG ATGGTGCACC CGGAAGACGA GCGCTACACG
CACCTGATCG GCAAGAGCGT CAAGCTGCCG ATCACCGGCA GGCTCGTGCC CGTGATTGCC
GACGATTACG TCGACAAGGC CTTCGGCACC GGCGTGGTCA AGGTGACGCC CGCGCATGAC
CAGAACGACT ACCAGGTCGG CCTGCGCCAC CAGCTGCCGA TGCTGACGAT CTTCACGCTC
GACGCCAAGG TCAACGACGA ACATGCCGAC GTGCCCGAGG CTTACCGCGG GCTGGATCGT
TTCGTGGCGC GCAAGCAGAT CGTCGCCCAG CTCGAAGCCG AGGGCCTGCT GGTCGAGGTC
AAGAAGCACA AGCTGATGGT GCCGCGCTGC GCGCGCACCG GCCAGATCAT CGAGCCGATG
CTGACCGACC AGTGGTTCGT CGCGATGACC AAGCAGGGCG CGAACGGCAA GTCGATCGCC
GAAGAGGCGA TCGAGGCGGT CGATTCGGGC GACGTCCAGT TCGTGCCCGA GAACTGGGTC
AACACCTACA ACCAGTGGAT GAAGAACATC CAGGACTGGT GCATCAGCCG CCAGCTCTGG
TGGGGCCATC AGATCCCGGC CTGGTATGGC TCATCGGGTG AGCTCTTCGT CGCGCGCAAC
GAGGACGAGG CCCGCGCCAA GGCCACGGCC GCGGGTTACA CCGGGGAGCT GACGCGCGAC
GAGGACGTGC TCGACACCTG GTACTCGTCG GCGCTGGTGC CGTTTTCCAC GCTCGGCTGG
CCCGAGCAGA CCCTCGAGCA GGACCTGTTC CTGCCGAGTT CGGTGCTGGT CACGGGCTAC
GACATCATCT TCTTCTGGGT CGCCCGGATG ATCATGATGA CCAAGCACTT CACCGGCCGC
GTGCCGTTCA AGCACGTCTA CATCCACGGC CTGGTGCTCG ACGCGCACGG CAAGAAGATG
AGCAAGAGCG AAGGCAACGT GCTCGACCCG GTCGACCTGA TCGACGGCAT CGCGCTGCCC
GAGCTGCTCG ACAAGCGCAG CACCGGCCTG CGCAAGCCCG AGAACGCGCC CAAGGTGCGC
AAGGCGACCG AGAAGGAGTT CCCGGACGGC ATCCCGGGTT ACGGCGCCGA CGCGCTGCGT
TTCACCTTCG CGTCGATGGC GAGTCTGGGC CGCAGCGTCA ACTTCGACAG CAAGCGCTGC
GAGGGCTATC GCAACTTCTG CAACAAGCTC TGGAACGCGA CCCGCTTCGT GCTGATGAAC
ACCGAGGGCC AGGATTGCGG CCTGATGGCG CACACCCAGG CCGAGTGCAG CGTGGGTGGC
CCGGCACACG GTTATCTGAA CTTCAGCCCG GCCGACCGCT GGATCACGAG CGAGCTGCAG
CGTGTCGAGT CGACGGTGGA GCAGGGCTTT GCCGAGTACC GGCTCGACTT CGTCGCCAGC
GCCATCTACC AGTTCGTGTG GGACGAATAC TGCGACTGGT ACCTCGAGAT CGCCAAGGTG
CAGCTCAACG AGGCCAAGGC GGCGGGCGAT GAAGCATCCG CACGCGCCAC CCGCCGCACA
CTGATCCGCG TGCTCGAAAC CATCCTGCGC CTGCTGCACC CGGTCACGCC CTTCATCACC
GCCGAGCTGT GGGACGTGGT CGCGCCGGTG GCCGGTCGCA AGACGGTGGG CGGTGCCGAG
TCGCTGGTGA CGGCCGCCTA CCCGAAGGCA CAGCCCGAAC GCATCGACGC CAAGGCCGAC
GCCTGGGTGG CTCAGCTCAA GAGCCTGGTC GGCGTGTGCC GCACGCTGCG CAGCGAGATG
GGGCTGTCAC CGGCCGAACG CGTGCCGCTG CTGACCTTCG GTGATGCCGA GTTCATCGCC
CAGGCCGCGC CGGTGCTCAA GGCGCTGGCC AAGCTGGGCG AGGTGCAGGT GCTGACCGAC
GAGACCGCCT TCAACGCCGC CACGCAGGCC GCGCCGGTGG TGGTGGCCGG TGCCGCGCGG
CTGGCGCTGA AGGTCGAGAT CGACGTGGTG GCCGAGCGCG AGCGCCTGGG CAAGGAAGTG
GCGCGCCTGA CCGGCGAGAT CGCCAAGGCC GAGGCCAAGC TGGGCAACGA GAGCTTCGTG
GCGCGGGCGC CGGCCGCGGT GGTGGCTCAG GAGCGCGCGC GGCTGGCGGA CTTTGCGGCC
ACCGTGATCA AGCTGCAAGA CCAGCTGCAG CGTCTGGCCT GA
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| Protein sequence | MTDALTKSFE PAPIEAKWAP LWEASGAYQP TLDPAKASFC IQLPPPNVTG TLHMGHAFNQ
TIMDSLTRYH RMRGDNTLWV PGTDHAGIAT QIVVERQLQA QGVSRHDLGR KNFVAKVWEW
KEQSGSTITT QMRRMGDSVS WPHEYFTMDP KLSKVVTETF VRLFDEGLIY RGKRLVSWDP
ILKSAVSDLE VESEEEDGSL WHIRYPVDGS DESLVVATTR PETMLGDTAV MVHPEDERYT
HLIGKSVKLP ITGRLVPVIA DDYVDKAFGT GVVKVTPAHD QNDYQVGLRH QLPMLTIFTL
DAKVNDEHAD VPEAYRGLDR FVARKQIVAQ LEAEGLLVEV KKHKLMVPRC ARTGQIIEPM
LTDQWFVAMT KQGANGKSIA EEAIEAVDSG DVQFVPENWV NTYNQWMKNI QDWCISRQLW
WGHQIPAWYG SSGELFVARN EDEARAKATA AGYTGELTRD EDVLDTWYSS ALVPFSTLGW
PEQTLEQDLF LPSSVLVTGY DIIFFWVARM IMMTKHFTGR VPFKHVYIHG LVLDAHGKKM
SKSEGNVLDP VDLIDGIALP ELLDKRSTGL RKPENAPKVR KATEKEFPDG IPGYGADALR
FTFASMASLG RSVNFDSKRC EGYRNFCNKL WNATRFVLMN TEGQDCGLMA HTQAECSVGG
PAHGYLNFSP ADRWITSELQ RVESTVEQGF AEYRLDFVAS AIYQFVWDEY CDWYLEIAKV
QLNEAKAAGD EASARATRRT LIRVLETILR LLHPVTPFIT AELWDVVAPV AGRKTVGGAE
SLVTAAYPKA QPERIDAKAD AWVAQLKSLV GVCRTLRSEM GLSPAERVPL LTFGDAEFIA
QAAPVLKALA KLGEVQVLTD ETAFNAATQA APVVVAGAAR LALKVEIDVV AERERLGKEV
ARLTGEIAKA EAKLGNESFV ARAPAAVVAQ ERARLADFAA TVIKLQDQLQ RLA
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