Gene Lcho_3618 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3618 
Symbol 
ID6163297 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4040134 
End bp4041222 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content70% 
IMG OID641666391 
ProductMg2 transporter protein CorA family protein 
Protein accessionYP_001792637 
Protein GI171060288 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0598] Mg2+ and Co2+ transporters 
TIGRFAM ID[TIGR01167] LPXTG-motif cell wall anchor domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.000031468 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGATCGTGA GCAGCCTGAG CAACGCCCTC AGCCGGAAAG AACCGGCCCG CCCCGGGCGC 
GCATCCACCG CAGAGGCCAC CTTCGGCAGC GACGCCGCCG GGCTGATCTG CGGCTACCTG 
TTTGCGCCCA CCGCCACGCC CATCGGCGCC GAGGCCGCCG CCGCCTGGCT GAAAGCCGAC 
CTCGCTGCCG ACGATGGCAC GCCCGCGCCC GACAGCTTCC TGTGGCTGCA TTTCAACCTC 
GCCGACAAGG CCGCCGAGCG CTGGCTGGCC GAACACACCG ATCTGGCCGA GGCGTTTTTC 
GACACCCTGC GCGGCGGCCT GCATTCGACC CGCGTCGAAC GCGTCGAGCA GACGCTGCTG 
GCGGTGGTCA ACGACCTGCA GTTCGACTTC GCCTTCGAGC CCTCCGACAC CGCGACGCTG 
TGGATCTGCC TGAACCGGCG CCTGGTCGTG ACCGGTCGGC GCAAGCCGCT GCGATCGGTC 
GACCAGCTGC GGGTGTCGGT GCGCGACGGC GAGCCGGTGC GCTCGAGCGC CGACCTGCTG 
GCCCAGCTGC TGCGCCACCA GGTCGACGTG CTGGGCGACC TGGCGCGCCA GATGACCAAC 
CGGGTCGACG AGGTCGAGGA CCGGCTGCTG TCGGGTCGGC TCGAACACAA GCGCGCCCGC 
CTGGGCGCCA TGCGCCGGCT GTTGGTGCGC CTGCAGCGCC TGCTGCTGCC CGAGCCGGCG 
GCGCTGTTCC GCCTGCTGCA GCATCCGCCG CCGTGGATGA CCGAGACCGA CGTGCAGGAC 
CTGCGCGACG CCACCGAGGA GTTCTCGGTC GTGCTGCGCG ACATGGTGGC GCTGCAGGAG 
CGCGTCAAGC TGCTGCAGGA AGAGGTCGCC GCGCAGGTCA ACGAGCAGAC CGGCCGCAGC 
CTGTTCGTGC TGACGGTGGT GACGGTGCTG GCGCTGCCGA TCAACATCAT CGCCGGCCTG 
CTGGGCATGA ACGTCGGCGG CATCCCGCTG GCCGAGCATG CGCACGGCTT CCTGATCATC 
GTGGGCATCG TCATCACCTT CATGTTCGTG GCCGGCTGGT GGGCCTTCCG CAAGAAGAAT 
GACGATTGA
 
Protein sequence
MIVSSLSNAL SRKEPARPGR ASTAEATFGS DAAGLICGYL FAPTATPIGA EAAAAWLKAD 
LAADDGTPAP DSFLWLHFNL ADKAAERWLA EHTDLAEAFF DTLRGGLHST RVERVEQTLL 
AVVNDLQFDF AFEPSDTATL WICLNRRLVV TGRRKPLRSV DQLRVSVRDG EPVRSSADLL 
AQLLRHQVDV LGDLARQMTN RVDEVEDRLL SGRLEHKRAR LGAMRRLLVR LQRLLLPEPA 
ALFRLLQHPP PWMTETDVQD LRDATEEFSV VLRDMVALQE RVKLLQEEVA AQVNEQTGRS 
LFVLTVVTVL ALPINIIAGL LGMNVGGIPL AEHAHGFLII VGIVITFMFV AGWWAFRKKN 
DD