Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3616 |
Symbol | |
ID | 6163295 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4037742 |
End bp | 4039322 |
Gene Length | 1581 bp |
Protein Length | 526 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641666389 |
Product | Ppx/GppA phosphatase |
Protein accession | YP_001792635 |
Protein GI | 171060286 |
COG category | [F] Nucleotide transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0248] Exopolyphosphatase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0000501756 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACGGCGG CCGACGAACT GGACGTGCTC GGCGAGCACG CCGAACACCG CATCGACGAT GTGCCGCTGC TGCTGCCGTC GTCGCACGGC GTGCACTGGC GTGGCGTGCT GGGCGCGATC GACATCGGTT CCAACAGTTT CCGCCTCGAG CTGGCGCAGA TCCGCGACGG CGAGTACCGG CGCATCGCCT ACCTGAAGGA AACCGTGCGC CTGGGCGCCG GCCTCGATGC CGACGGCCGC CTCGACCGCG CCGCCGCCGA GCGTGGCCTG GCCTGCCTGG CGCGCTTTCG CCAGCGCCTG GGCGGCCTGC CGACCGGCCA GCTGCGCGCG GTGGCGACGC AGACGCTGCG CGAGGCGAAC AACCGCGACA CCTTCCTGTT CCAGGCCGAG CACGTGCTCG GTTATCCGAT CGAGGTGATC TCCGGGCGCG AGGAGGCGCG GCTGATCTAC GCCGGCGTGT CGCGCCTGGA GCCCGGCAAT CACGCGCGGC TGGTGGTCGA CATCGGCGGG CGCTCGACCG AGCTGATCCT CGGCGAAGGC CGCACGCCGA AGATCGCCGA GTCGTTCCAG ATCGGCAGCG TCAGCCTGTC GGCGCGCTAT TTCGGCGACG GCCGCTGCAC CGAGCAGGCC TTTCGCCGGG CCCAGATCGC CGCCGAGGCG CAGCTCGAAG AGGCGCTGCA GGCCTTCGGA CGCGAGCGCT GGGTCGAGGT GCTGGGTTCG TCGGGCACGG CCGGCGCGGT CAGCCAGCTG CTGCAGGCCA ATGGCCGCAG CGACGGCACC ATCACGCCCG ACGGCCTGCG CTGGTGCATG CGCCAGTGCA TCGCCGCCGG CTCGGTCGAG GCGCTGACCC TGCCCGGCCT GCGCGACGAG CGTCGCGCGG TGCTGGCCGG CGGGCTGGCG ATCCTGGCCG CGCTGCTCAA TCAGTTCGGC ATCGCCGAGC TGCGGCCGAC CCGCGCCGCC TTGCGCCAGG GCGTGATCTT CGACCTGGCA CAGCGCATCC AGGCGCGGCG CGAGCCCGAC GGCCACGGCT GGCGCGACGA GACCGTGGCC GAGCTGCAGC GCCGCTTCCA GGTCGACCTG CTGCAGGCGC AGCGGGTGCA GACGCTGACG CTGGCGCTGT TCGACCAGAT GGTGCGCACG CCTGACGCAG AGGCGCGCCA GGAGCTTGCC TGGGCCGCCG CGCTGCACGA GATCGGCATG AGCGTGTCGC ACCACGACCA CCACCGCCAC AGCGCCTACC TGCTGGCGCA CATCGACGCG CCGGGGTTTT CGCAGAGCCA GCAGCGCCGC CTGGCCGACC TGGTGCTGGG CCAGCGCGGC GGCCTGCGCA AGATCGAGGC CATGCTGGCC GATCCGAAAC GGGTCGCGCA GGTGCTCGCG CTGCGGCTGT CGGTGCTGTT CTTCCATGCC CGCTGCGATC TGCTGCAGTC GGTGCCCGAG CTCGGCCTGG TCGCCGGCAC CGCCACCCTG GTGCTCGACC CCACCTGGGC CCGCGACAAC CCGCGCTGCA TGCACCTGCT GCGCGAGGAG GCCGCGGCCT GGGCCCGGGT CGGCGACCTG ACGCTGCAGC TGGCGTCCTG A
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Protein sequence | MTAADELDVL GEHAEHRIDD VPLLLPSSHG VHWRGVLGAI DIGSNSFRLE LAQIRDGEYR RIAYLKETVR LGAGLDADGR LDRAAAERGL ACLARFRQRL GGLPTGQLRA VATQTLREAN NRDTFLFQAE HVLGYPIEVI SGREEARLIY AGVSRLEPGN HARLVVDIGG RSTELILGEG RTPKIAESFQ IGSVSLSARY FGDGRCTEQA FRRAQIAAEA QLEEALQAFG RERWVEVLGS SGTAGAVSQL LQANGRSDGT ITPDGLRWCM RQCIAAGSVE ALTLPGLRDE RRAVLAGGLA ILAALLNQFG IAELRPTRAA LRQGVIFDLA QRIQARREPD GHGWRDETVA ELQRRFQVDL LQAQRVQTLT LALFDQMVRT PDAEARQELA WAAALHEIGM SVSHHDHHRH SAYLLAHIDA PGFSQSQQRR LADLVLGQRG GLRKIEAMLA DPKRVAQVLA LRLSVLFFHA RCDLLQSVPE LGLVAGTATL VLDPTWARDN PRCMHLLREE AAAWARVGDL TLQLAS
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