Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3565 |
Symbol | |
ID | 6161059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3982839 |
End bp | 3983516 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641666338 |
Product | 17 kDa surface antigen |
Protein accession | YP_001792584 |
Protein GI | 171060235 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3133] Outer membrane lipoprotein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.221572 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCGCA CCGTTTCCCC CGTCGTCGTC GAGCCGCGCA CCCATTCCGG TGGCGCCATG ACGATGACCC CGCATGCGGC CGCGCCGATG CCGGCCGCCG CCGGGCGTCT GCCCGTGGGC TGGATCGCCG CCGGCGTGCT GGCGCTCGGT GCCGTGGCCG CCGGCGCCTA TTACGCCGGC CGTGGTGCCG AGCGCGCGCC CGACGAGCCG GTGCCGGCCG CCGCGCAGAT GAACGCGCAG CAGGACAACG CCCAGGCCGA CGCGCCGAAG AAGGCGCCGG CCAAGCCCAC CTCGTCGGCC CGATCAAATG CCACCGGCAA CCCATCCGCC GATGCCGCAC CGGCGGTGGC CTGCCCGATG TGCGGCGTGG TCGAGTCGGT CACCGCCGTG CAGCGCAAGG GTGAAGGCAC CGGTGTCGGC GCCGTGGCCG GTACGGTGGT GGGCGGCGCG CTGGGCAACC AGGTCGGCGG CGGCAACGGC CGCACCGCGA TGACCGTGCT CGGCGCCATC GGCGGCGCGG TGGCCGGCAA CGAGGTCGAG AAGCAGGTCC GCGCCGTCAC GGTCTACCGC GTCAAGGTGC GCACCGATGG CGGCGAGGTG CGCACCATCG AGCAGAGCAG CTCGCCGGCG GTCGGCCAGC GTGTCAAGGT CGACGGCAAC CGCCTGCAGA TGCTCTGA
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Protein sequence | MSRTVSPVVV EPRTHSGGAM TMTPHAAAPM PAAAGRLPVG WIAAGVLALG AVAAGAYYAG RGAERAPDEP VPAAAQMNAQ QDNAQADAPK KAPAKPTSSA RSNATGNPSA DAAPAVACPM CGVVESVTAV QRKGEGTGVG AVAGTVVGGA LGNQVGGGNG RTAMTVLGAI GGAVAGNEVE KQVRAVTVYR VKVRTDGGEV RTIEQSSSPA VGQRVKVDGN RLQML
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