Gene Lcho_3561 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3561 
Symbol 
ID6161055 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3980486 
End bp3981373 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content74% 
IMG OID641666334 
ProductABC-3 protein 
Protein accessionYP_001792580 
Protein GI171060231 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1108] ABC-type Mn2+/Zn2+ transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.232243 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCTCT ACAGCCTGCT CATCCAGCCC TTTGCCGATT TCGGCTTCAT GCGCCGCGCC 
CTGGTCGCCA CGCTGGCGCT CGCGCTCGGC GGTGCGCCGC TGGGTTGCCT GCTGGTGCTG
CGCCGCATGA GCCTGGTCGG CGAGGCGATG GCGCACGCGC TGCTGCCCGG CGCCGCGGTC
GGTTATCTGG TCGCCGGGCT GTCGCTGACC GCGATGGGCA TCGGCAGCTT CGTGGCCGCG
CTGCTGGTGG CGCTGCTGGC CGGCGCGGTC AGCCGCGCCA CCCGCCAGCG CGAGGACGCC
AGCTTCACCG CCTTCTACCT GGTGGCGCTG GCGCTGGGCG TGCTGCTGCT GTCGCTGCGC
GGCGGCGGTG CCGACCTGCT GCACGTGCTG TTCGGCAGCG TGCTGGCGAT CGACGACGCC
GCGCTGGCGC TGATCGCCGC GGTCTGCAGC CTGACGCTGC TCGCGCTCGC GCTGGCCTGG
CGGCCGCTGG TGATGGACAG CGTCGACGCC GGTTTCCTGC GCAGCGTCAG CGCCGCCGGG
CCGTGGGTGC ACGGCCTGTT GCTGGTGCTG GTGGTGGCCA ATCTGGTCAG CGCCTTCCAG
ACCCTGGGCA CGCTGATGGC GGTCGGCCAG ATGATGCTGC CGGCGATCGC CGCGCGCTTC
TGGGCCGCCA GCCTGATCGG CATGGTCTGC GTGGCGCTGG CGATCGCGGT GCTGGCCGGC
GCGGCCGGGC TGCTGCTGTC CTTCCACGCC GAACTGCCGT CGGGGCCGAG CATCGTGCTG
GTCAGCGGCC TCGCGTATCT GCTGTCGGTG CTGCTGGGGC GGGTCGACGG CGTGCTGCCG
CACCTGCTGC GGCGCGACCG CCATCCGGCC GCCGTGGAGG GCGCGTGA
 
Protein sequence
MDLYSLLIQP FADFGFMRRA LVATLALALG GAPLGCLLVL RRMSLVGEAM AHALLPGAAV 
GYLVAGLSLT AMGIGSFVAA LLVALLAGAV SRATRQREDA SFTAFYLVAL ALGVLLLSLR
GGGADLLHVL FGSVLAIDDA ALALIAAVCS LTLLALALAW RPLVMDSVDA GFLRSVSAAG
PWVHGLLLVL VVANLVSAFQ TLGTLMAVGQ MMLPAIAARF WAASLIGMVC VALAIAVLAG
AAGLLLSFHA ELPSGPSIVL VSGLAYLLSV LLGRVDGVLP HLLRRDRHPA AVEGA