Gene Lcho_3548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3548 
Symbol 
ID6160939 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3969887 
End bp3970849 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content70% 
IMG OID641666321 
Productcation diffusion facilitator family transporter 
Protein accessionYP_001792567 
Protein GI171060218 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0053] Predicted Co/Zn/Cd cation transporters 
TIGRFAM ID[TIGR01297] cation diffusion facilitator family transporter 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.058207 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCATGA ACCTCGACGA CCTGTCTGAC GACCCCGATC ACGACCTTCA CAGCCCGGCC 
GAGCGCGCCG CCGCGGCATC ACGCAGCACC TGGGTCAGCG TGGCGGTCAA CCTGGTGCTC 
AGCATCACCC AGATCGCGGT GGGCATCGTC GCGCGCTCGC AGGCGCTGAT CGCCGACGGC 
CTGCATTCGC TGTCGGATCT GGTGGCCGAT TTCGTCGTGC TGCTGGCCAG TCACCACAGC 
CAGAAGGACG CCGACGCGGA CCACCCGTAC GGCCATCAGC GCTTCGAGAC CGCGGCCTCG 
CTGGTGCTGG GCCTGCTGCT GCTGGCGGTG GGGGCGGGCA TGTTGTGGTC GGCCGCGCGC 
AAGCTCGAGT CGCCCGAGAC CATCGAGACG GTGCAGGTGA TGGCGCTGTG GGTGGCCGGC 
GCCGCGCTGG TGGGCAAGGA GCTGCTGTTT CGCTACATGC TGGCGGTGGC CAAGCGGGTC 
AAGTCGAGCA TGCTGGTGGC CAACGCCTGG CACGCGCGCT CGGACGCGGC GTCGTCGCTG 
GTGGTGGGCA TCGGCATCAT CGGCAACCTG GCGGGTTATC CGATCCTCGA CCCGATCGCC 
GCGGCGATCG TCGGCTTCAT GGTCGCCCGG ATGGGCTGGT CGTTCAGCTG GGACGCGCTG 
CACGACCTGA TGGACCGGGC GATCGACGAG CAGGAGGTCG AGGCGATCCG CCGCACCCTG 
GCCGAGACAC CCGGCGTGCG CAACGTGCAC GACGTGCGCA CCCGCAAGAT GGGCGACCTG 
ATCGTGGTCG ACGCCCACAT CGAGGTCGAC GCGCACATCA GCGTCGAGGC CGGCCACGAC 
ATCGCCGTGG CGGCGCGCCA GCGCGTGCTG CAGCGCCACC GGGTGCTCAA CCTGATGACG 
CATGTGGATC CGTGGCACCG GCCCGATCTG GACCACGCCC GGCCCGGGCC CGGGTCACAC 
TGA
 
Protein sequence
MAMNLDDLSD DPDHDLHSPA ERAAAASRST WVSVAVNLVL SITQIAVGIV ARSQALIADG 
LHSLSDLVAD FVVLLASHHS QKDADADHPY GHQRFETAAS LVLGLLLLAV GAGMLWSAAR 
KLESPETIET VQVMALWVAG AALVGKELLF RYMLAVAKRV KSSMLVANAW HARSDAASSL 
VVGIGIIGNL AGYPILDPIA AAIVGFMVAR MGWSFSWDAL HDLMDRAIDE QEVEAIRRTL 
AETPGVRNVH DVRTRKMGDL IVVDAHIEVD AHISVEAGHD IAVAARQRVL QRHRVLNLMT 
HVDPWHRPDL DHARPGPGSH