Gene Lcho_3517 details

Gene Information

• Locus tag: Lcho_3517
• ID: 6162114
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3929012
• End bp: 3930898
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 641666290
• Product: K potassium transporter
• Protein accession: YP_001792536
• Protein GI: 171060187
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG3158] K+ transporter
• TIGRFAM ID: [TIGR00794] potassium uptake protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.00569528
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

GTGAGCTCTG CTTCCAACCG CCGCCTCACG CCCGGCGAGC TTGCCGGCCT GACGCTGGGC 
GCCCTGGGCG TCGTCTATGG CGACATCGGC ACCAGCCCGC TGTACGCCCT GAAGGAAGTC 
TTCCACGCCG GCCATGTCCC GCCGAGCGAC GCCAACATCC TCGGGGTGCT GTCGCTGATC 
TTCTGGACCA TGACGACGGT GATCTCGCTG AAGTACGTGC TGCTGATCCT GCGCGCGGAC 
AACAACGGCG AAGGCGGGCT GATCGCGATG CTCGCGCTGG CCACGCACGC CGTGCGCGAA 
CGCCCGGCCC TGCGCGACAC GCTGATGATC GTCGGCCTGT TCGGCACCGC CGTCTTCTAC 
GGCGACGGCG TCATCACGCC GGCGATCTCG GTGCTCTCGG CGGTCGAGGG CCTCGAAGTC 
GCCACCCCGC AGTTGCACAA CATGGTGCTG CCGATCACGC TGGTCGTGAT CACCGGCCTG 
TTCGCGGTGC AGCGCCTGGG CACCGGCGGC ATCGGCAAGG CATTCGGCCC GATCACGCTC 
GTCTGGTTCG GGGTGCTGAT CGCGCTCGGC CTGCCGCACA TCGTCGCCAA CCCGGCGGTG 
CTGGTCGCGG TGAGCCCGAC CTATGCGATG GCCTTCTTTG TCGACCAGCC GCTGGTCGCC 
TTCATCGCGC TCGGGGCGGT GGTCTTGTGC GTCACCGGCG GCGAGGCGCT CTACGCCGAC 
CTGGGCCACT TCGGCAAGCT GCCGATCCGC ATCGCCTGGT ATGCGCTGGT CATGCCGGCG 
CTGGTGATCA ACTACTTCGG CCAGGGCGCG ATGCTGCTCG GCCATCCCGA GGCGATCGAC 
AACCCGTTTT TCCTGATGGC GCCCAAGTGG GCCCAGCTGC CGCTGGTGTT CCTGGCCACG 
GCGGCCACGG TGATCGCCTC GCAGGCGCTG ATCACGGCGG CGTTCTCGGT CACCAAGCAG 
GCGGTGCAGC TGGGCATCCT GCCGCGCATG GTGATCAAGC ACACCTCCGT GCGCGACACC 
GGCCAGATCT ACGTGCCCTT CGTCAACTGG GGGCTGTACG TCTTCATCGT GCTGGCGGTG 
GCGCTGTTCA AGAGCTCGTC GAACCTGGCC TCGGCCTACG GCATCGCCGT CACGCTGGAC 
ATGACGATCA CCACCATCAT GACCTTCTAC GTGATCCGCT ACGGCTGGCG CTACCCGCTG 
TGGCTGTGCA TCGCCGCCAC GGGCTTCTTC TTCATCATCG ACGTCACCTT CTTCGCCTCC 
AACATGCTCA AGCTGTTCGG CGGCGGCTGG TTCCCGCTGG TGATCGGCGT GGGCATGTTC 
ACGCTGATGC TGACCTGGAA ACAGGGCCGC GCGCTGATGG CCGAACGCCT GCGCGACGAC 
GCCATCGATC TCAAGAGCTT CCTCGAAGCC GTCTTCGTCA GCCCGCCCAC CCGGGTCAGC 
GGCACGGCGG TGTTCCTGTC GGCCGAATCC GGCCTCACGC CCAATGCGCT GCTGCACAAC 
CTCAAGCACA ACAAGGTGCT GCACGAGCAC AACCTGTTCG TCTCGGTACG CCACCACGAC 
GTGCCCTGGA TCGGCTTCGA CCAGCGCATC CAGATGGAGC AGCTGGGCCG CCACTGCTGG 
CAGGTGACGC TGAATTTCGG CTTCAAGAAC GACCCCGACG TGCCCGAGGC GCTCAAGCTG 
CTCGAAGGCC GCGGCGTGCC GCTCGACGAG ATGGACACCA GCTACTTCCT GTCGCGTGAC 
ATCGTCATCC CGACCTTCGG CCATGGCATG TCGATGTGGC GCGAGAAGCT GTTCGCCAAC 
ATGCACCGCA ACTCGGCGGC GGCGGCCGAC TTCCTCAACC TGCCGTCGAA CCGGATCGTC 
GAACTGGGCG CCAAGGTCGA GATCTGA 

 

Protein sequence

MSSASNRRLT PGELAGLTLG ALGVVYGDIG TSPLYALKEV FHAGHVPPSD ANILGVLSLI 
FWTMTTVISL KYVLLILRAD NNGEGGLIAM LALATHAVRE RPALRDTLMI VGLFGTAVFY 
GDGVITPAIS VLSAVEGLEV ATPQLHNMVL PITLVVITGL FAVQRLGTGG IGKAFGPITL 
VWFGVLIALG LPHIVANPAV LVAVSPTYAM AFFVDQPLVA FIALGAVVLC VTGGEALYAD 
LGHFGKLPIR IAWYALVMPA LVINYFGQGA MLLGHPEAID NPFFLMAPKW AQLPLVFLAT 
AATVIASQAL ITAAFSVTKQ AVQLGILPRM VIKHTSVRDT GQIYVPFVNW GLYVFIVLAV 
ALFKSSSNLA SAYGIAVTLD MTITTIMTFY VIRYGWRYPL WLCIAATGFF FIIDVTFFAS 
NMLKLFGGGW FPLVIGVGMF TLMLTWKQGR ALMAERLRDD AIDLKSFLEA VFVSPPTRVS 
GTAVFLSAES GLTPNALLHN LKHNKVLHEH NLFVSVRHHD VPWIGFDQRI QMEQLGRHCW 
QVTLNFGFKN DPDVPEALKL LEGRGVPLDE MDTSYFLSRD IVIPTFGHGM SMWREKLFAN 
MHRNSAAAAD FLNLPSNRIV ELGAKVEI