Gene Lcho_3500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3500 
Symbol 
ID6159984 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp3913391 
End bp3914032 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content70% 
IMG OID641666273 
Productpeptidyl-tRNA hydrolase 
Protein accessionYP_001792519 
Protein GI171060170 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0193] Peptidyl-tRNA hydrolase 
TIGRFAM ID[TIGR00447] peptidyl-tRNA hydrolase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.000000021188 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATTCGAC TCTTCGTCGG CCTCGGCAAC CCGGGCCCCG AGTACGAGGC CACGCGCCAC 
AACGCCGGGT TCTGGTGGAC CGATGCACTG GCCCGACGCT GGAACTGCCA GCTCCAGCCC 
GACCGCAGCT ACCACGGCCT GATGGCGCGC TGCACCCAGC GCGGCACGCC GGTCTGGCTG 
CTGCAGCCGA TGACCTACAT GAACCTGTCG GGCAAGTCGG TCGCGGCGCT GGCGCGCTTC 
TTCAAGATCG AGCCGGCCGA GATCCTGGTC GTGCACGACG AACTGGATCT GCTGCCCGGC 
CAGATGAAGC TCAAGCAGGG CGGCAGCGCA GCCGGTCACA ACGGCTTGAA GGACATCCAG 
GCCCAGCTCG GCAACCCGGA GTTCTGGCGC CTGCGCCTGG GCATCGGGCA CCCGGGGGTC 
AAGGCCGAGG TGGCCGCCTA CGTGCTGCGC AAGCCGCCGT CAGCAGAACG GGAGGCGATC 
GAGGCCTGCA TCGATCGGTC GCTGGATGCC GTCGACCGCA TGCTGGGCGC CGACATGCCG 
GCCGCGATGA TGCAGATGCA TGCCAAGCCG CCGCGGCCCA AACCGCCACG CCCCGTCACC 
GCACCAGGCG CGCCGGTGCC GCCCACCGAA CCGTCGGCCT GA
 
Protein sequence
MIRLFVGLGN PGPEYEATRH NAGFWWTDAL ARRWNCQLQP DRSYHGLMAR CTQRGTPVWL 
LQPMTYMNLS GKSVAALARF FKIEPAEILV VHDELDLLPG QMKLKQGGSA AGHNGLKDIQ 
AQLGNPEFWR LRLGIGHPGV KAEVAAYVLR KPPSAEREAI EACIDRSLDA VDRMLGADMP 
AAMMQMHAKP PRPKPPRPVT APGAPVPPTE PSA