Gene Lcho_3477 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3477 
Symbol 
ID6159787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3888921 
End bp3890816 
Gene Length1896 bp 
Protein Length631 aa 
Translation table11 
GC content71% 
IMG OID641666251 
Producthypothetical protein 
Protein accessionYP_001792498 
Protein GI171060149 
COG category[L] Replication, recombination and repair 
COG ID[COG5519] Superfamily II helicase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.00832403 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATGACG ACCTGAACAC CGCGGCCGGC GACCTCGATC ACCTGGCACG AGTGGCCGCT 
GGCGAAGCCG GTGAAGTCGA GCAGGTGCAC GCCGAAGTGA CCGAACTGGC CGCAGTCCGC
AAGGCCCGGC GCAAGAGCAC CCAGGCGACC GCCCCCACCA AGCCCAGGCG CAGCGGGCAC
GGCGCAGGCG CGCAGTTCCT GATTCTCGAC GGCAGCGAGG GCCAAGGATC GGCCGGCGTG
TACTTCGTCG GCCGCGATGC CGAGGGCAAC GAGAAGGCGC CGCTGTGGGT CTGCGCGCCG
CTGCACATCC TGGCCAAGAC CCGGGGCGCC AAACAAGCCG ACTGGGGCCG CCTGCTGGAC
TGGCACGACG CAGACGGACA CCCGCACCGC TGGGCCGTGC CCGATGAGCT GCTCAGTGGC
GACGGCCTGG ACGTGCGCCG CGAGCTGATG CGTCAGGGGC TGGCCATCTC GCCGAACCGG
GCCGCGCGCG AGATGCTGTC GACCTATCTG CAGGTCTGGC CGGTCGACGC CCGCGCGCGA
TGCGTGGAGC GGCTGGGCTG GGCCGGGCCG GTGTTCGTGC TGCCCAATGA GGCCATCGGC
GCTGATGCCG AGTTGGTGGT GTTCCAGAGC GCCAGCGCCA TCGAGCCCGC ATTCAGCAGC
GCCGGTACCG TCGACGACTG GCGCGCCCAG GCCGCCGCGC TGGCTGCAGG CAACAGCCGC
ATGGTGTTCG CCATCTGCTG CGCGCTGGCG CCGCCGCTGG CCAGCCTGGC GGGCGAGGAT
TCGGGCGGCT TCCACCTGCG CGGCAAGAGC AGTTCGGGCA AGTCGACCGC GCTGGCGCTG
GCCGCATCGG TGTGGGGCTC GCCCGCGACC TTCCCGCGGC TGTGGCGCAC CACCACCAAC
GGACTCGAAG GGCTGGCGAC GATGCACAAC GACGTGTTGC TGATCCTCGA CGAGCTGAGC
CAGTGCGACC CCAAGGACGC GGGCGACGCC GCCTATCTGC TGGCCAACGG GCAGGGCAAG
ACGCGTGCGA GCCGCGCCGG CATGGCGAGG CAGGCTGCGC GCTGGCGCCT GCTGTTCCTG
TCGGCCGGGG AAGAGAGCCT GTCGGCCATG ATGACCCGCG CCGACAAGCG GGCGAACGCG
GGGCAGGAAA TCCGCCTGGC CGACATCGAG GCCGACGCGG GCGCCGGGCT GGGTGCGTTC
GACACCTTGC ACGGGCACCC GAGCGGCGCG GCGCTGTCGC TGGCGCTGAA GGATGCGGTG
CAACAGCAGC ACGGCGCCGT CGGCGTCGCC TGGCTGCGGC TGGTGGTGCG GGATCGCCTG
AAGCTGGCCG ATGAAGTGAC GGCGCTGGTG CGCGAGTTCG TGGACGCCTA CACCGAGCCC
GGCTCCAGCG GGCAGGTGAT CCGGGTGGCG CGGCGCTTCG GCCTGGTCGC GGCTGCCGGC
GAACTGGCCA CGGACTACGA CCTGACCGGC TGGCGAGGGG GCGAGGCGTT CGACGCCGTG
GGGCAGTGCT TCACGTCTTG GCTGGCCGGG TTCGGTGGCG CGGGAAACCG CGAAGACCGG
GCGCTGTTGA CACAGGTGCG GGCGTTCTTC GAGGTGCACG GCGCCAGCCG CTTCGAGAGC
ATGGAAGCCA CCGTTGAACA GCGTGTCGCC AACCGGGCCG GCTTCTGGCG CGACGGGGAG
GACACCGGCC GGCAGTTCCT GGTGCTGCCC GAGGTGTTCA AGCGCGAGCT GTGCGCGGGG
TTCGATCCGA AGGCCGCGGC GAAGGCGCTG ATCGAGGCGG GTGTGATCCT GGCCGGCAAG
GACGGGAAGG CCAGCCGCAG CGAGCGATTG CCCGGCATCG GCGCCACGTC GCGGGTGTAC
GTGTTCGGGT CGAAGCTGTG GGCGTGCGAG GAATGA
 
Protein sequence
MNDDLNTAAG DLDHLARVAA GEAGEVEQVH AEVTELAAVR KARRKSTQAT APTKPRRSGH 
GAGAQFLILD GSEGQGSAGV YFVGRDAEGN EKAPLWVCAP LHILAKTRGA KQADWGRLLD
WHDADGHPHR WAVPDELLSG DGLDVRRELM RQGLAISPNR AAREMLSTYL QVWPVDARAR
CVERLGWAGP VFVLPNEAIG ADAELVVFQS ASAIEPAFSS AGTVDDWRAQ AAALAAGNSR
MVFAICCALA PPLASLAGED SGGFHLRGKS SSGKSTALAL AASVWGSPAT FPRLWRTTTN
GLEGLATMHN DVLLILDELS QCDPKDAGDA AYLLANGQGK TRASRAGMAR QAARWRLLFL
SAGEESLSAM MTRADKRANA GQEIRLADIE ADAGAGLGAF DTLHGHPSGA ALSLALKDAV
QQQHGAVGVA WLRLVVRDRL KLADEVTALV REFVDAYTEP GSSGQVIRVA RRFGLVAAAG
ELATDYDLTG WRGGEAFDAV GQCFTSWLAG FGGAGNREDR ALLTQVRAFF EVHGASRFES
MEATVEQRVA NRAGFWRDGE DTGRQFLVLP EVFKRELCAG FDPKAAAKAL IEAGVILAGK
DGKASRSERL PGIGATSRVY VFGSKLWACE E