| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3464 |
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| Symbol | |
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| ID | 6159781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3871991 |
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| End bp | 3874105 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666239 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001792487 |
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| Protein GI | 171060138 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.140727 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAGTC TGCCGCGGGT TTTCATAGTC GACGACGACG TGGCGGCGAT CCAGCTGCTC
TCGCGCATCC TTGAGCCCCA GTACACCGTG TGTTTCGCGA CCTCCGGTGC CGACGCCCTG
ACGCGCCTGG GCCACGACCG CTGCGACATC GTGCTGCTCG ATGCGCAGAT GCCCGGCATG
GACGGCTTCG AGCTGCTGCG CCGCATCAAG CGCGACCCGT ATCTGCAGGG CATGCCGGTG
GTCTTCGTCA CGGCGCATGT CGACGAGGCC AACGAGTCGC TCGCCCTCGC GCTCGGTGCC
GCCGACTTCA TCACCAAGCC CTTCAGCCCG CCGGTGGTGC ACGCGCGCGT GGCCAACGTG
CTGCGTCTGT ACCGCGACAA CGCCGAGAAC CTGCAGCGCA ACGAGGCGCG CTGGATCTTC
GCGGTCGAGG GCGCGGAGCA GGGCGTCTGG GACTGGGATC TGCGCGAGCA CAGCGTCACG
CTGTCGCAGC AGTGGCGCAT CCTGCTGGGC GACGACGAAG GCGCGGGCGA CACCAGCGTC
GACGCCTGGC GCGCACGCGT CCACCCCGAC GACGCCGCGG CGGTGCAGCG CCGCCTCGAC
CGCCACCGGC GCGGCATCAG CAGCGGCTAC GAGAGCGAGC ACCGCATGCG CTGCGGCGAC
GGCAGCTACG TCTGGGTGCT CGAGGGCGGG CGGGTCGTGC AGCACGACGA GGCCGGTCGG
CCGATGCGCA TGATCGGCAC GCTCAGCGAC ATCTCGCGCC GCAAGGAAGC CGAGGCGCAG
GCCTTCAGCC TGGCGTTCTA CGACCCCGTG ACCGAGCTGC CGAACCGCCG CCGGCTGGTC
GAGCTGCTGC GCTTCAGCCT GGTCGGCGAC CAGCTCGGCC AGGGCAGCGC CACGCTGTGC
CTGGTCGACC TGGACCATTT CAAGCTCGTC AACGATGCCC ACGGCCACGA TGTCGGCGAT
CAGCTGCTGC GCCAGGTCGC CGTCCGCCTG AAGGCCTGCG TGCGCCAGCA GGACATCGTC
GCGCGGCTCG GTGGCGACGA GTTCGCCGTG CTGCTGATGC ACGAGCGCCG CTCGGCGGTC
TCGCCCGCCG CAGCTGCCGA GGCGGCCGGT GCCAAGCTGC TGGCGGTGCT GGCCGAGCCC
TACGCGATCG GCGACCACCT GCACCACTGC AGCGCCAGCA TGGGCGTGGT GGCGGTCGAT
GCCGACAAGG CCGAGCAGGC CGAGCAGCTT CTGAAGTGGG CCGACATCGC GCTCTACGAG
GCCAAGCGGG CCGGCCGCGG CTGCCTGAGG TTCTTCGATC CGGCGATGCA GGCGGCGGTC
GAGGCCCGTT CGGCGCTCGA GGCCGAGCTG CGCACCGCGC TGGCCTGCCG GCAGTTCCAG
CTGGTCTACC AGCTGCAGGT CGGCGACCGC TCGGCCGCGC TCGGCGCCGA GGCCCTGGTG
CGCTGGCACC ACCCGCAGCG CGGCGTGATC GGCCCGACCG AATTCATCGC GCTGGCCGAG
GAAACCGGCC TGATCGTGCC GCTCGGGCGG GTGCTGCTCG AGCAGGTCTG CGAGCAGCTG
TGCGCCTGGG AGCGCGACGC CGATCTCGAC GACCTGACCG TGGCGCTCAA CATCAGCGCC
CGCGAGCTGC ACGAACCCGA TTTCGTCGAC TTCGTGCTGG CCACGCTGGC ACGCACCGGC
GCGCCGGTGC GCCGCCTCAA GCTCGAGCTC ACCGAGAGCG CACTGGTGGG CGACGTCGAC
GACATCGCCG CGCGCATGCA CCGCCTGCGC GACCACGGCG TGGGTTTTTC GCTCGACGAT
TTCGGCACCG GCTTCTCGTC GTTGTCCTAC CTCAAGCGGC TGCCGTTCGA CCAGCTCAAG
ATCGACCGCT CGTTCGTGCG CGACATCCTC GAGGACACCG TCGACGCGCG GCTGTCGCGT
GCCATCGTGG CGCTGGCGGC CAGCCTGGGC CTGAGCGTGG TGGCCGAAGG GGTCGAGCTG
GCGGCGCAGG GCGACATGCT GCGCGAGTTC GGTTGCCGGC AGTTCCAGGG CTTCCTGTAC
GGCGTGCCGA TGCCCGCCGC AGAGTTTTCG AGCGTCCTGC GCGCCGCCCG TCGAGAAGCT
GGCGCGGTGG TCTAG
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| Protein sequence | MSSLPRVFIV DDDVAAIQLL SRILEPQYTV CFATSGADAL TRLGHDRCDI VLLDAQMPGM
DGFELLRRIK RDPYLQGMPV VFVTAHVDEA NESLALALGA ADFITKPFSP PVVHARVANV
LRLYRDNAEN LQRNEARWIF AVEGAEQGVW DWDLREHSVT LSQQWRILLG DDEGAGDTSV
DAWRARVHPD DAAAVQRRLD RHRRGISSGY ESEHRMRCGD GSYVWVLEGG RVVQHDEAGR
PMRMIGTLSD ISRRKEAEAQ AFSLAFYDPV TELPNRRRLV ELLRFSLVGD QLGQGSATLC
LVDLDHFKLV NDAHGHDVGD QLLRQVAVRL KACVRQQDIV ARLGGDEFAV LLMHERRSAV
SPAAAAEAAG AKLLAVLAEP YAIGDHLHHC SASMGVVAVD ADKAEQAEQL LKWADIALYE
AKRAGRGCLR FFDPAMQAAV EARSALEAEL RTALACRQFQ LVYQLQVGDR SAALGAEALV
RWHHPQRGVI GPTEFIALAE ETGLIVPLGR VLLEQVCEQL CAWERDADLD DLTVALNISA
RELHEPDFVD FVLATLARTG APVRRLKLEL TESALVGDVD DIAARMHRLR DHGVGFSLDD
FGTGFSSLSY LKRLPFDQLK IDRSFVRDIL EDTVDARLSR AIVALAASLG LSVVAEGVEL
AAQGDMLREF GCRQFQGFLY GVPMPAAEFS SVLRAARREA GAVV
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