| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3461 |
|---|
| Symbol | |
|---|
| ID | 6159896 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3864699 |
|---|
| End bp | 3867062 |
|---|
| Gene Length | 2364 bp |
|---|
| Protein Length | 787 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641666236 |
|---|
| Product | xanthine dehydrogenase, molybdopterin binding subunit |
|---|
| Protein accession | YP_001792484 |
|---|
| Protein GI | 171060135 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG4631] Xanthine dehydrogenase, molybdopterin-binding subunit B |
|---|
| TIGRFAM ID | [TIGR02965] xanthine dehydrogenase, molybdopterin binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.222432 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTCC TGAACGACGC CTTCGCCAAG CCGATCGACG CAACAGCCGA CGCGCCTGAT
CCACGCCGCG TCGGCGTCAA TCGCGCACAC GAATCGGCCC ACCTGCACGT GGCCGGTGCC
GCGCCCTACA TCGACGACAT CCCCGAAGTG GCCGGCACGC TGCACGCGGC GCTGGGCCTG
TCGCCGCTGG CGCACGGCAG GCTGCTCGGC ATCGACCTCG ACCTGCTGCG CGCCCAGCCC
GGCGTGGTGG CGGTCTACAC CGCCGCCGAT CTGGCGGGCT TGAACGACTG TGGCCCGATC
GTGCACGACG AGCCGATCCT GGCCGAAGGC ACCTTGCGCT ACGTCGGCCA GCCGGTGTTC
GCGGTGATCG CTCAAACGCG CGACCTCGCC CGCCGCGCCG CCGACCTCGC AAAGAAGGCG
ATTCGCGCCG AGCCGCTGCC GGCAGTGATG ACGGCCCGCG AAGCCCACGC GCTGCAGCAG
TACGTGGTGC CGCCGATGAA GCTCGCGCGT GGCGACGCCC CCGCCGCACT GGCCGCCGCA
CCACATCGGC TGAACGGCAG TTTCAGCCTC GGTGGCCAGG AGCAGTTCTA CCTCGAAGGC
CAGATCTCGT ATGCGATCCC GCAGGAAGAC GGCGGCCTGC TGGTGCACTG CTCGACCCAG
CACCCGAGCG AGATGCAGCA CCTGGTGGCT CACGCGCTCG GCCTGTCGTC GCACCAGGTG
CAGGTGCAGT GCCGGCGCAT GGGCGGGGGT TTCGGTGGCA AGGAGTCGCA ATCGGCGCCG
TTCGCCTGCA TCGCCGCACT GGCCGCGCAG CGGCTGGGCC GGCCGGTCAA GCTGCGGCCC
GATCGCGACG ACGACATGTT GATCACCGGC CGGCGCCACG GCTTCGAGTT CGACTACGAG
GTCGGCTTCG ACGACGCCGG CCACGTGCTT GGCGTGACGA TCGACATGAT CGCCAACGCC
GGCCATTCGG CCGACCTGTC GCCGCCGGTG ATGACACGTG CGCTGTGCCA CTTCGACAAC
GCCTACTGGC TGCCGAACGT GGCGATGCGC GGCTACTGCG CGCGCACCAA CACGCAGAGC
AACACCGCGT TCCGCGGCTT CGGCGGGCCG CAGGGCGCGC TGGCTGTCGA GTGGATCCTC
GACGGCATCG CGCGCCAGCT CGGTCTCGAC GCGCTGGCGG TGCGGCAGGC CAACTTCTAC
GGCGTGACCG ATCGCAACGT CACGCCCTAC GAGCAGGTCG TCGAAGACAA CGTCATCCAC
CCGCTGGTCG AGCAGCTCGC CCGCGAGGCC GATTACGCCG GGCGTCGCGC CGAGATCGAC
GCCTTCAACG CCAGCAGCCC GGTGCTGAAA AAAGGCCTGG CGCTGACGCC GGTGAAGTTC
GGCATCAGCT TCAACGTCGC GCACTTCAAC CAGGCGGGCG CGCTGGTGCA CGTCTACGCC
GACGGCTCGA TCCTGGTCAA CCACGGTGGC ACCGAGATGG GCCAGGGCCT GAACACCAAG
GTGGCGATGG TGGTGGCGCA CGAACTGGGC GTGGGTTTCG AGCGCGTGCG TGTCACCGCC
ACCGACACGC AGAAAGTGGC CAACACCTCG GCCACCGCGG CGTCGACCGG CAGCGACCTC
AACGGCAAGG CGGCGCAGGA CGCGGTGCGG CAGATCCGCG CGCGGCTGGC CGCGTTCATC
GCCCGACGCT GGCAGGTGTC GGCCGACGCG GTGGTGTTCG GCAACGACGT CGTCAGCGCG
GGCGAACACC GCATCGGTTT TGCCGAACTG GCGACGCAGG CGTATTTCGG CAGCGTGCAG
CTGTGGAGCG ACGGCTTCTA CGCCACGCCC GGCCTGCACT GGAACCGCGA GACGCTCAAG
GGCAAGCCGT TCTTCTACTT CGCCTACGGC GCCGCCGTCA GCGAGGTGCT GATCGACACG
CTGACCGGCG AATGGAAGCT GCTGCGCGCA GATGCGCTGC ACGACGTGGG CGCCTCGCTG
AATCCGGCCG TCGACATCGG CCAGGTCGAA GGTGCCTTCG TGCAGGGCAT GGGCTGGCTG
ACCACCGAGG AGCTGTGGTG GCACCCCAAG ACGGGCAAGC TGATGACGCA CGCGCCCAGC
ACCTACAAGA TCCCGACCGC CAACGACGTG CCCGAAGCTT TCCACGTCAA GCTGTTCGAG
AACCGCAACA GCGCCGACAC CATCCACCGC AGCAAGGCGG TCGGCGAGCC GCCGCTGCTG
CTGCCGTTCA GCGTGTTCCT GGCGATCCGC GACGCGGTGT CGGCGGCGGG CGGTCACCGC
ACGCAGCCGC CGTTGCGCGC ACCGGCCACC AGCGAGGCAA TCCTGGATGC GGTGATGGCG
GTGCAAGGCG CGGCCACGGC GTGA
|
|---|
| Protein sequence | MNVLNDAFAK PIDATADAPD PRRVGVNRAH ESAHLHVAGA APYIDDIPEV AGTLHAALGL
SPLAHGRLLG IDLDLLRAQP GVVAVYTAAD LAGLNDCGPI VHDEPILAEG TLRYVGQPVF
AVIAQTRDLA RRAADLAKKA IRAEPLPAVM TAREAHALQQ YVVPPMKLAR GDAPAALAAA
PHRLNGSFSL GGQEQFYLEG QISYAIPQED GGLLVHCSTQ HPSEMQHLVA HALGLSSHQV
QVQCRRMGGG FGGKESQSAP FACIAALAAQ RLGRPVKLRP DRDDDMLITG RRHGFEFDYE
VGFDDAGHVL GVTIDMIANA GHSADLSPPV MTRALCHFDN AYWLPNVAMR GYCARTNTQS
NTAFRGFGGP QGALAVEWIL DGIARQLGLD ALAVRQANFY GVTDRNVTPY EQVVEDNVIH
PLVEQLAREA DYAGRRAEID AFNASSPVLK KGLALTPVKF GISFNVAHFN QAGALVHVYA
DGSILVNHGG TEMGQGLNTK VAMVVAHELG VGFERVRVTA TDTQKVANTS ATAASTGSDL
NGKAAQDAVR QIRARLAAFI ARRWQVSADA VVFGNDVVSA GEHRIGFAEL ATQAYFGSVQ
LWSDGFYATP GLHWNRETLK GKPFFYFAYG AAVSEVLIDT LTGEWKLLRA DALHDVGASL
NPAVDIGQVE GAFVQGMGWL TTEELWWHPK TGKLMTHAPS TYKIPTANDV PEAFHVKLFE
NRNSADTIHR SKAVGEPPLL LPFSVFLAIR DAVSAAGGHR TQPPLRAPAT SEAILDAVMA
VQGAATA
|
|---|
| |