Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3460 |
Symbol | |
ID | 6159895 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3863110 |
End bp | 3864702 |
Gene Length | 1593 bp |
Protein Length | 530 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641666235 |
Product | xanthine dehydrogenase, small subunit |
Protein accession | YP_001792483 |
Protein GI | 171060134 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG4630] Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A |
TIGRFAM ID | [TIGR02963] xanthine dehydrogenase, small subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.266307 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGACA CCCGGCCCAT CCGTTTCCAT CACCGCGGCA GCGTGCAGAC CGTTGCCGGC GCACCCACCA CCCGCAGCCT GCTCGAGTGG CTGCGCGAAG ACCAGCGCTG CACCGGCAGC AAGGAAGGCT GCAACGAGGG CGACTGCGGC GCCTGCACCG TGATCGTGGC CGAACTCGCC ACCGAACAGG ACCGCAAGAC ACCCGGCGCC ACGCTGATCG GCAGCGGCGA TTCGACCTTG CGGCTGCGCA ACCTCAACGC CTGCCTCACT TTCCTGCCCA CGCTCGACGG CAAGGCGCTG ATCACGGTCG AAGACCTGCC ACGCGCCTGC GGTCTGCCGG CAGGTCAGCT GCATCCCGCG CAGCAGGCGA TGGTCGATTG CCACGGCTCG CAATGCGGTT TCTGCACGCC CGGTTTCGTG ATGACGATGG CCACGGTGCA CGAGCGCCAG GCGGCAACGG ATCAGCCCGC CAGCCGCGCC ACGCTGTCCG ACGACCTGGC CGGCAACCTG TGCCGCTGCA CCGGCTATCG GCCGATCCTG GACGCCGCGA TGCGGCTCGG CGACGCCACC GCCGCCCGCA TCGACGCCGC GCCGATCGCC GCCGCGCTGC AGGCGCTGGC GCACGATGCG CCGCTGCATT ACGCCGCGCA GAACCCGGCC GTGATCGCCG ACGGCATCGC GCGCACCGAC CATTTCCACG CGCCGCGCAC GGTGGCCGAA CTGGCCGCGC TGCGCCTCGC CAACCCGCAG GCACGCCTGC TGGCCGGCGC CACCGACATC GGCCTGTGGG TCAACAAGCT GTTCCGCGAC CTGGGCGAGC TGCACTTCAT CGGCGAAGTG GCCGAGCTGA AGCGGCTGGC CGTCATCGAC GGCGCGCTGC ACATCGGCGC GGCCGTGAGC CTGGAAGACG CCTGGTCCGC GCTCGCCACG GCCACGCCCG AGCTGACCGA AGTCTGGAAG CGTTTCGCCT CGCCGCCGGT GCGCCACGCC GGCACGCTGG GCGGCAACAT CGCCAACGGC TCGCCGATCG GCGACGGCGC GCCGGTGCTG ATGGCGCTCG ATGCACAACT CGTGCTGCGC CTGGGCGACG TCACGCGCAC GGTCGCGCTG AAAGACTTCT ACCTCGGCTA CATGGTCAAC GCGCTGGCGC CGGGCGAGTT CATCCAGGAA CTGCGCGTGC CGCTGCCCGA TGCACACACC CTCGTGCGGG TCTGGAAAGT CTCCAAGCGC TACGACAGCG ACATCTCGGC GCTATGCGGC GCATTCGCGT TGAAGCTCGA TGCCAACAGT GTGATCGGCC ATGTGCGCCT GGCCTGGGGC GGCCTCGCCG CGACCGTGAA ACGCGCGGTC GGCGCCGAAG TCGCGCTGCT CGGCCAGCCC TGGAACGAGG CCACGCTGCA AGCGGCTCAA GTCGCGCTGG CGCAGGAGTT CCAGCCGCTC GACGACCTGC GCGCCAGCGC CGCCTACCGC CGCACGGTGG CCGCCAATCT GCTGCGCCGG CTGTGGCTCG AAACCCGCCT CGACGCGCCT CTCGACGCGA CGCACACCCG CGTCTGGAAC ACCGCCAACC CGACCGAATC GGAGGCCGCA TGA
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Protein sequence | MTDTRPIRFH HRGSVQTVAG APTTRSLLEW LREDQRCTGS KEGCNEGDCG ACTVIVAELA TEQDRKTPGA TLIGSGDSTL RLRNLNACLT FLPTLDGKAL ITVEDLPRAC GLPAGQLHPA QQAMVDCHGS QCGFCTPGFV MTMATVHERQ AATDQPASRA TLSDDLAGNL CRCTGYRPIL DAAMRLGDAT AARIDAAPIA AALQALAHDA PLHYAAQNPA VIADGIARTD HFHAPRTVAE LAALRLANPQ ARLLAGATDI GLWVNKLFRD LGELHFIGEV AELKRLAVID GALHIGAAVS LEDAWSALAT ATPELTEVWK RFASPPVRHA GTLGGNIANG SPIGDGAPVL MALDAQLVLR LGDVTRTVAL KDFYLGYMVN ALAPGEFIQE LRVPLPDAHT LVRVWKVSKR YDSDISALCG AFALKLDANS VIGHVRLAWG GLAATVKRAV GAEVALLGQP WNEATLQAAQ VALAQEFQPL DDLRASAAYR RTVAANLLRR LWLETRLDAP LDATHTRVWN TANPTESEAA
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