Gene Lcho_3437 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3437 
Symbol 
ID6160191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3839523 
End bp3840587 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content67% 
IMG OID641666212 
Productinner-membrane translocator 
Protein accessionYP_001792460 
Protein GI171060111 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4177] ABC-type branched-chain amino acid transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.00193702 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATTTATC GTGAAAACGG TCAGTTCAAG ACCAGCTACC GTGCCGACCA GCAGATCTTC 
CCGATCCGCC AGGACCGCAT CGCCGTGCTG CTGCTGCTCG CGTTCGCGGC GCTGGTGGTG
CCGGCGATCG CGTCCGAGTA CGTCTTCCGC GCCATCCTGA TCCCGTTCCT GATCCTGTCG
CTGGCGGCGC TGGGGCTGAA CATCCTGGTC GGCTACTGCG GCCAGATCTC GCTGGGCACC
GGCGCCTTCA TGGCGGTGGG CGCGTATGCG GCCTACAACT TCTCGGTGCG CATCGACGGC
ATGCCGCTGA TCGCCGCGCT GCTGCTGGGC GGGCTGTGCG CCACCGGCGT GGGCGTGCTG
TTCGGCATCC CGAGCCTGCG CATCAAGGGG CTGTACCTGG CGATGGCGAC GCTGGCGGCG
CAGTTCTTCA CCGACTGGGC CTTCCTGCGC ATCCGCTGGT TCACCAACGA CTCGTCGTCG
GGTTCGGTCA GCGTGGCCGG GCTCAACGTG CTGGGCATCC CGATCGACAC CCCGGTGCAG
AAGTACCTGT TCTGCCTGGC CTTCCTGAGC GTCTTCGCGC TGCTGGCCAA GAACCTGGTG
CGCGGCAACA TCGGCCGCGA GTGGATGGCG ATGCGCGACA TGGACGTGGC CGCCGCGGTG
ATCGGCATCC GGCCGATCTA CGCCAAGCTC ACCGCGTTCG CGGTCAGCAG CTTCATCGTC
GGCGTGGCCG GCGGGCTGTG GGGCTTCGTG CACCTGGGCT CGTGGGAGCC GGCGGCGTTC
TCGATCGACC GCTCGTTCCA GCTGCTGTTC ATGGTGATCA TCGGCGGGCT GGGCTCGATC
ATGGGCAGCT TCTTCGGCGC CGCCTTCATC GTGCTGCTGC CGATCCTGCT CGACAACGCG
CCCTACTGGT TCGGCATCCC GATCGACACC GCCACCGCCG CGCACCTGAC GTCGATGATC
TTCGGCGCGC TGATCGTGTT CTTCCTGATC GTCGAACCGC ACGGCCTGGC CCGGCTGTGG
TCGATCGCCA AAGAGAAGCT GCGGCTGTGG CCCTTCCCGC ATTGA
 
Protein sequence
MIYRENGQFK TSYRADQQIF PIRQDRIAVL LLLAFAALVV PAIASEYVFR AILIPFLILS 
LAALGLNILV GYCGQISLGT GAFMAVGAYA AYNFSVRIDG MPLIAALLLG GLCATGVGVL
FGIPSLRIKG LYLAMATLAA QFFTDWAFLR IRWFTNDSSS GSVSVAGLNV LGIPIDTPVQ
KYLFCLAFLS VFALLAKNLV RGNIGREWMA MRDMDVAAAV IGIRPIYAKL TAFAVSSFIV
GVAGGLWGFV HLGSWEPAAF SIDRSFQLLF MVIIGGLGSI MGSFFGAAFI VLLPILLDNA
PYWFGIPIDT ATAAHLTSMI FGALIVFFLI VEPHGLARLW SIAKEKLRLW PFPH