| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3434 |
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| Symbol | |
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| ID | 6163128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3835738 |
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| End bp | 3837684 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641666209 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_001792457 |
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| Protein GI | 171060108 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00276334 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTCCACCA CATTCCCGCG CCTGCTGCTT GAACACGCCG CCCGACGCCC CGATGCGCCG
GCGCTGCGCG AGAAGGAATA CGGCATCTGG CAGACCTGGA GCTGGCGCCA CCTGGCCGAG
CAGGTGCGCC TGATCGCCGG CGGCCTGGCC GCGGCCGGCC TGCAGGCCGG CCAGCACATC
ATCGTGGTCG GCGACAACCG CCCACGCCTG AGCGCCACCA TGCTCGCCGC ACAGAGCCTG
GGCGCGATCC CGGTGCCGCT GTACCAGGAC GCGGTGGCGG CCGAATTCGT CTTCCCGGTC
AACAACGCCG AGGTCGCGTT CGCGGTGGTC GAGGACCAGG AACAGGTCGA CAAGATGCTC
GAGATCCGCG AGCACTGCCC GCAGCTCGCG CACATCTGGT TCGACGATCC GCGCGGCCTG
CGCAAGTACG ACGAGCCCGG CCTGGCCTCG CTCGAGGCGC TGATGGCCGA GGGCCAGGTG
CATGCGCAGC GCCACGCCGG CTTCTTCGAG GCGGCGATCG AGCGCACCCG GGCCGACGAC
GTGGCGGCGA TGTTCTTCAC CTCCGGCACC ACCGGCAACC CCAAGGGCGT GGTGCACACG
CACGCGTCGC TGATCGACCG CTCCGGCGCC GGCGCGCGTT TCGACAAGCT GACCGAGCAC
GAGGAGGTGC TGGCCTACCT GCCGCCGGCC TGGATCGGCC AGAACTGCTT CAGCTACGCG
CAGTGGCTGG TGTGCGGCTA CGTCGTCAAC TGCCCCGAGT CGGCCGCCAC CGTGACGATC
GACCTGAAAG AGATCGGCCC GACCTACTAC TTTGCGCCGC CGCGCGTCTT CGAGGGCCTG
CTGACCAGCG TGATGATCCG CATGGAAGAC GCCAGCCGCA TCAAGAAGTG GCTGTTCGAG
CGCTGCATGG CGCTGGCCCG CCGGGTCGGC CCGGCGCGCA TGGACGGGCA ACAGCTGGGC
GCGCTCGACC GCTTCAAGTA CGCGCTCGGC GACCTGTGCA TCTACGGCCC GCTGCGCAAC
TCGCTGGGCA TGAGCCGGGT GCGCGTGGCC TACACCGCCG GCGAGGCGAT CGGGCCCGAC
CTGTTCACCT TCTACCGCTC GATCGGCATC AACTTGAAGC AGCTCTACGG CTCGACCGAG
ACCGCCGTGT TCGTCTGCCT GCAGCCCGAC CACGAGGCCC GCGCCGACAC GGTGGGCGTG
CCGATCGAGG GCGTGCAGAT CAAGCTGGCC GACAACGGCG AGATCCTGGT CAAGAGCGGC
GGCCTGCTCA AGGAGTACTA CAAGAACCCG GCCGCCACGG CCGAGGTGCT CAACGCCGAG
GGCTGGTATC ACACCAGCGA CGCCGGCTTC ATCGACGCGC ACGGCCACCT CAAGATCATC
GACCGCGTCA AGGACGTCGG CCGGCTGATG GGCGGCGCCA ACGACGGCGC GATGTTCGCG
CCCAAGTACG TCGAGAACAA GCTGAAGTTC TTCCCGTACA TCAAGGAGGC GGTGGCCTTC
GGCGACCGGC GCGAGCGGGT CTGCGCCTTC ATCAACATCG ACGTCGAGGC GGTCGGCAAC
TGGGCCGAAA AGCGCAACCT GCCCTACGCC GGCTACACCG ACCTGGCGCA GAAGCCCGAG
GTCTACGAGC TGATCCGCGA CTGCATCGAG AAGGTCAACG CCGACCTGGC GCAGGACACC
TTGCTGACCG GCAGCCAGAT CAGCCGCTTC CTGGTGCTGC ACAAGGAACT CGACGCCGAC
GACGGCGAGA TGACGCGCAC CCGCAAGGTC AAGCGCGGTT TCATCAACGA CAAGTACAAG
GTGCTGGTCG ACGCCCTCTA CGACGGCAAG ACCGAGCAGT TCATCGAGAC GGTGGTGAAG
TTCGAGGACG GCCGCAGCGG CAGCGTCTCG GCCACCTTGA AGATCGGCGA CGCCCGGACG
TTGCCGGCAG TGCGGAGGGC GGCATGA
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| Protein sequence | MSTTFPRLLL EHAARRPDAP ALREKEYGIW QTWSWRHLAE QVRLIAGGLA AAGLQAGQHI
IVVGDNRPRL SATMLAAQSL GAIPVPLYQD AVAAEFVFPV NNAEVAFAVV EDQEQVDKML
EIREHCPQLA HIWFDDPRGL RKYDEPGLAS LEALMAEGQV HAQRHAGFFE AAIERTRADD
VAAMFFTSGT TGNPKGVVHT HASLIDRSGA GARFDKLTEH EEVLAYLPPA WIGQNCFSYA
QWLVCGYVVN CPESAATVTI DLKEIGPTYY FAPPRVFEGL LTSVMIRMED ASRIKKWLFE
RCMALARRVG PARMDGQQLG ALDRFKYALG DLCIYGPLRN SLGMSRVRVA YTAGEAIGPD
LFTFYRSIGI NLKQLYGSTE TAVFVCLQPD HEARADTVGV PIEGVQIKLA DNGEILVKSG
GLLKEYYKNP AATAEVLNAE GWYHTSDAGF IDAHGHLKII DRVKDVGRLM GGANDGAMFA
PKYVENKLKF FPYIKEAVAF GDRRERVCAF INIDVEAVGN WAEKRNLPYA GYTDLAQKPE
VYELIRDCIE KVNADLAQDT LLTGSQISRF LVLHKELDAD DGEMTRTRKV KRGFINDKYK
VLVDALYDGK TEQFIETVVK FEDGRSGSVS ATLKIGDART LPAVRRAA
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