| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3413 |
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| Symbol | |
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| ID | 6162420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3797581 |
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| End bp | 3798627 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641666188 |
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| Product | outer membrane porin |
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| Protein accession | YP_001792436 |
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| Protein GI | 171060087 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.000000336209 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAACAAGT CCATGATTGC CCTGGCGGTT CTCGCCGGTT TCGCTGGCGT TGCGTCGGCT
CAATCCTCGG TGACTCTGTC GGGCAGCATC GACGCAGGTG TGCGCCGCAT CGACGGCGTG
AACGACATGG CCGGTGCCGG TTCGTCGCGC AACAACCTGA CGTTCTCGGG TGTTGAAGAC
CTGGGTGGCG GCAACAGCGC CTTCTTCACG CTGAACCATC GTTTCAACGT GCAGAGCGGC
ACCCAGAACG GCCAGAATAG CGTTGTCAGC ACGACCGCCG CTGGCCTGCC CAACGCGGCC
GACCCGGCTG CTCAGTTCTA CCGCAACGTG TGGGTTGGTC TGAAGAACAA CGCCATCGGC
GATCTGCGCC TGGGTCGTTT CCTGTACCCG GTGCAAGAGC TGAACGGCAA CTACGATGCG
TTCGGCACCG ACACCGTCGG TTCGACCCAC ACCGGCGGCC TGAAGGCCAA CCTGCGTACC
AACAGCTCGG CTTACCTGCG CTCGGCAAAT TTCGCTGGCT TCCAGCTTCA CCTGGCTACC
GGCTTCAAGA ACAACGGCCA GACGAACCAA GTCGTCGCCG CCACACCGCC CGCAACTGGC
TTCGTGACGG TTGCCAACAC CAAGGCTCCG GTTGGCGCAG CAGCCGTGTT TGCCACTGGC
CCGATGTCTG TTGCTCTGGC ATACGACAGC AACGGTGCCG AGCTGACCAC CAAGGCCCTG
TACGGTTCCT ATGACCTGGG CGTTGCGAAG CTGATGGCTC AGTACGAAAA GACCGACGTG
AACGTTGCTC AGACTGCATC TGACAAGCGT TACTCGTTCA GCGCGACGAT TCCGGTCGGT
GCACTGAGCA AGGCCAAGGT CGGCTACCTG CACATCGACG ACACCACCAA GGCTGGTACG
CAGAGCAAGT TCGGTGCTGG CTTCGACTTC GGTCTGTCCA AGCGCACGAC GGTTTACACC
GACGTGGCCA AGCTGCGTGG CGACGAAGGC CTGACCACCA ACAACAAGAA GGTTCGCTTC
GACATCGGCG TCAACCACAA GTTCTGA
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| Protein sequence | MNKSMIALAV LAGFAGVASA QSSVTLSGSI DAGVRRIDGV NDMAGAGSSR NNLTFSGVED
LGGGNSAFFT LNHRFNVQSG TQNGQNSVVS TTAAGLPNAA DPAAQFYRNV WVGLKNNAIG
DLRLGRFLYP VQELNGNYDA FGTDTVGSTH TGGLKANLRT NSSAYLRSAN FAGFQLHLAT
GFKNNGQTNQ VVAATPPATG FVTVANTKAP VGAAAVFATG PMSVALAYDS NGAELTTKAL
YGSYDLGVAK LMAQYEKTDV NVAQTASDKR YSFSATIPVG ALSKAKVGYL HIDDTTKAGT
QSKFGAGFDF GLSKRTTVYT DVAKLRGDEG LTTNNKKVRF DIGVNHKF
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