| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3410 |
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| Symbol | |
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| ID | 6162417 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3793901 |
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| End bp | 3795169 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666185 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001792433 |
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| Protein GI | 171060084 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0000272348 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCCTTC CTGGCGCCCC TCACCTCGCC CGCCGCGGCC GCGACCTCTA TCTCGAAGAC
TGCCAGCTGG CCACGCTGGC GCAGCAGCAC GGCACGCCGC TGTACGTCTA CTCGCAGGCC
TCGATGCTCG ATGCGCTGGC CGCCTACCAG CGCGCACTCG CCGGCCGGCC GCACCTGATC
TGCTATGCGA TGAAGGCCAA TTCGAGCCTC GCCGTGCTGC AGACCTTCGC CCGCGCCGGC
TGCGGCTTCG ACATCGTCTC CGGCGGTGAA CTGCAGCGCG TGCTGGCGGC TGGCGCGAGC
GCCTCGAAGG TGGTGTTCTC GGGCGTCGGC AAGACCCGCA CCGAGATGCG CCAGGCGCTC
GAAGCCGGCG TGCGCTGCTT CAACGTCGAA AGCGAAAGCG AACTGGCGCT GCTGTCGCAG
GTGGCGGTCG AGCTGGGCGT GCGTGCGCCG GTCAGCCTGC GCGTCAACCC CGATGTCGAC
GCCGGCACTC ACCCCTACAT CTCGACCGGC CTGAAGGGCA ACAAGTTCGG CATCGCGCAC
GAGCAGGCGC TGGCGGTCTA TCGGCACGCC GCGCAACTGC CCGGCATCGC GGTGCGCGGC
ATCGACTGCC ACATCGGCTC GCAGCTCACC GAGGTGGCGC CGTTTCTCGA TGCACTCGAC
CGCATCCTGG ATCTGGTCGA GGCCATCGAG GCCGCCGGCA TCACGCTGCA CCACCTCGAT
CTGGGCGGCG GCCTGGGCAT CACCTACACC GACGAAACCC CGCCCAGCGC CGACGAACTG
ATCGCCCAGC TGCTCGCTCG CATCGACGCC CGTGGCCACG GCCACCGAGA AATCGTCTTC
GAACCTGGCC GCTCGCTGGT CGGCAACGCC GGCGTGCTGC TCACCGAGGT GCTTTATCTC
AAGCCGGGCG AGACCAAAAA CTTCTGCATC GTCGACGCCG CCATGAACGA CCTGATGCGC
CCGGCCATGT ACGAGGCCTG GATGGGCATC GTGCCGTGCA CCGAACGCGA CGCCCCTGCC
GTCACCTGGG ACGTGGTCGG CCCGGTCTGC GAGTCGGGCG ACTGGCTGGG ACGCGAGCGC
GAACTGGCGG TCGCGCCCGG CGATCACCTG GCGATCCTGT CGGCCGGCGC CTACGGCATG
GCGATGGCCA GCAACTACAA CACCCGCGGC CGCGCCGCCG AGGTGATGGT GCGCGGCCAC
CAGGCCACGC TGATCCGGCG CCGCGAATCG GCCGCCGAGC TGTACGCCAA CGAGCGCCTG
ATCGACTGA
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| Protein sequence | MTLPGAPHLA RRGRDLYLED CQLATLAQQH GTPLYVYSQA SMLDALAAYQ RALAGRPHLI
CYAMKANSSL AVLQTFARAG CGFDIVSGGE LQRVLAAGAS ASKVVFSGVG KTRTEMRQAL
EAGVRCFNVE SESELALLSQ VAVELGVRAP VSLRVNPDVD AGTHPYISTG LKGNKFGIAH
EQALAVYRHA AQLPGIAVRG IDCHIGSQLT EVAPFLDALD RILDLVEAIE AAGITLHHLD
LGGGLGITYT DETPPSADEL IAQLLARIDA RGHGHREIVF EPGRSLVGNA GVLLTEVLYL
KPGETKNFCI VDAAMNDLMR PAMYEAWMGI VPCTERDAPA VTWDVVGPVC ESGDWLGRER
ELAVAPGDHL AILSAGAYGM AMASNYNTRG RAAEVMVRGH QATLIRRRES AAELYANERL
ID
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