| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3396 |
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| Symbol | |
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| ID | 6163213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3773784 |
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| End bp | 3778550 |
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| Gene Length | 4767 bp |
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| Protein Length | 1588 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641666171 |
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| Product | glutamate synthase (ferredoxin) |
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| Protein accession | YP_001792419 |
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| Protein GI | 171060070 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0069] Glutamate synthase domain 2 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCAGG CTGCCTCGGG ACCCGCGTCC CAAGCTGAAA TCCAATCCCT TGCTGCCCAC
GGTCTGTACG ACCCGGCCCA CGAGAAAGAC GCCTGCGGCG TCGGTTTCGT CGCGCACATC
AAGGGCACCA AGGCGCACTC GATCGTCGAG CAGGGCCTGA AGATCCTCGA GAACCTCGAC
CATCGCGGCG CCGTCGGCGC CGATGCGCTG ATGGGCGACG GTGCGGGCAT CCTGCTCCAG
GTGCCCGATG AACTGTTTCG CGCCGAGATG GCCGCGCAGG GCGTCGAGCT GCCGCCGCTG
GGCGAATACG GCGTCGGCAT GATCTTCCTG CCCAAGGAAC ACGCCTCCCG CCTGGCCTGC
GAGCAGGAGC TCGAGCGCGC CGTCAAGGCC GAGGGCCAGG TGCTGCTGGG CTGGCGCGAC
GTGCCGGTCG ACGCGGCGAT GCCGATGTCG CCCACCGTGC GCACCACCGA GCCGGTGATC
CGCCAGATCT TCATCGGCCG TGGCGCCGAC GTGATCGTGC CCGATGCGCT CGAGCGCAAG
CTCTACGTCA TCCGCAAGAC CGCCTCGGCC GCGATCCAGG CGCTCAAGCT GACGCACAGC
CGCGAGTACT ACGTGCCCAG CATGTCGTGC CGCACGATCA TCTACAAGGG CCTGCTGCTG
GCCGACCAGG TCGGCAAGTA CTACCTCGAC CTGCAGAACC CGGCCTGCAC CTCGGCGCTG
GCGCTGGTGC ACCAGCGTTT CTCGACCAAC ACCTTCCCCG AGTGGCCGCT GGCCCACCCG
TACCGGATGG TGGCGCACAA CGGCGAGATC AACACCGTCA AGGGCAACTT CAACTGGATG
CGCGCCCGCG AAGGCGTCAT GAAGTCGCCG GTGCTGGGTG ACGACCTGAA GAAGCTCTAC
CCGATCAGCT TCGAGGGCCA GTCCGACACC GCCACCTTCG ACAACGCGCT CGAGCTGCTG
ACGATGTCGG GCTACTCGCT GGCGCACGCC GCGATGATGA TGATCCCGGA GGCCTGGGAA
CAGCACACCA CGATGGACGA GCGGCGTCGC GCGTTCTACG AGTACCACGC CGCGATGATC
GAACCGTGGG ACGGCCCGGC CGCAATGGTC TTCACCGACG GCAAGCAGAT CGGCGCCACG
CTGGACCGCA ACGGCCTGCG CCCGGCGCGC TACATCGTCA CCGACGACGA CCTGGTCGTG
ATGGCCTCCG AGGCCGGCGT GCTGCCGATC CCCGAGAACA AGATCGTGCG CAAGTGGCGC
CTGCAGCCGG GCAAGATGTT CCTGATCGAC TTCGAGCAGG GCCGCATCGT CGACGACGAG
GAGCTGAAGA ACCAGTTCGC GTCGGCCAAG CCGTATCGGC AGTGGATCGA GAACGTGCGC
ATCAAGCTCG GCACCATCCC GGCCGGCGAG ACGCAGGCGC CGGTGTTTGC CGAGTCGCTG
CTCGACCGCC AGCAGGCCTT CGGCTACACG CAGGAGGACA TCAAGTTCCT GCTCGCGCCG
ATGGCCGCCA ACGGCGAAGA AGGCATCGGC TCGATGGGCA ACGACTCGCC GCTGGCGGTG
CTGTCGGACA AGAACAAGCC GCTGTTCAAC TACTTCAAGC AGCTGTTCGC GCAGGTCACC
AACCCGCCGA TCGACCCGAT CCGCGAAGCG ATCGTGATGT CGCTCGACAG CTTCATCGGC
CCCAAGCCGA ACCTGCTCGA CATCAACGCG GTGAACCCGC CGATGCGGCT CGAGGTCAGC
CAGCCGGTGC TCGACTTCGC CGACATGGCG CGCCTGCGCG GCATCGAGCG CCACACCGGC
GGCAAGTTCA AGTCGTACGA GCTCAACATC GTCTATCCGC TGGCCTGGGG CGCCGAAGGC
GTCGAGGCCA AGCTGGCGTC GCTGTGCGCC GAAGCCGTGG ACGCGATCAA GAGCGGCCAC
AACATCCTGA TCATCACCGA CCGCTGGATG GACCGCGAGC TGGTGGCGAT CCCCGCGCTG
CTGGCGCTGT CGGCTGTCCA CCATCACCTG GTGCGTGAAG GCCTGCGCAC GACCGCCGGC
CTGGTGGTCG AGACCGGCTC GGCGCGCGAG GTGCATCACT TCGCGGTGCT GGCCGGCTAC
GGTGCCGAAG CCGTGCACCC CTACCTGGCG CTCGAGACCC TGGCCGACCT GCACAAGGAA
CTGCCGGGCA ACCTGAGCGC CGACAAGGCG ATCTACAACT ACGTCAAGGC GGTCGGCAAG
GGTCTGTCGA AGATCATGTC CAAGATGGGC GTGTCGACCT ACATGTCGTA CTGCGGTGCG
CAGCTGTTCG AGGCGATCGG CCTCAACAAG GACCTGATCG CCAAGTACTT CCGCGGCACG
CCCACGCAGG TCGAGGGCAT CGGCGTGTTC CAGGTCGCCG AAGAGGCGAT CCGCAACCAC
CGCGCCGCGT TCGGCGACGA CCCGGTGCTG GCCAACATGC TCGACGCTGG CGGCGAATAC
GCCTGGCGCA GCCGCGGTGA AGAGCACATG TGGACGCCCG ACGCGATCGC CAAGCTGCAG
CACAGCACGC GCGCCAACAA GTTCGACACC TACAAGGAAT ACGCGCAGAT CGTCAACGAT
CAGAACAAGC GTCACCTGAC GCTGCGCGGC CTGTTCGAGT TCAAGCTCGA CCCGAGCAAG
GCGATCCCGC TGGAAGAAGT CGAATCGGCG GCCGAGATCG TCAAGCGTTT CGCCACCGGC
GCGATGTCGC TGGGCTCGAT CAGCTCCGAG GCGCACTCGA CGCTGGCGAT CGCGATGAAC
CGCATCGGCG GCAAGTCCAA CACCGGCGAA GGCGGCGAGG ATCCGGCGCG TTATCGCAAC
GAGCTCAAGG GCATCAAGAT CACCGACGGC ACCAAGGTGT CGGACGTGAT CGGCGCCAAG
GTGATCGAAG CCGACTACAC GATGAAGGAC GGCGACAGCC TGCGCTCGAA GATCAAGCAG
GTGGCGTCGG GCCGTTTCGG CGTCACGACC GAGTACCTGG TGTCGGCCGA CCAGATCCAG
ATCAAGATGG CCCAGGGCGC CAAGCCGGGC GAGGGCGGCC AGCTGCCGGG CGGCAAGGTG
TCCGAGTACA TCGGCCGTCT GCGTCACTCG GTGCCGGGCG TGGGCCTCAT CAGCCCGCCG
CCGCACCACG ACATCTACTC GATCGAGGAT CTGGCGCAGC TGATCCACGA CCTGAAGAAC
GTCAATCCGG CCTCGTCGAT CAGCGTCAAG CTGGTGTCGG AAGTGGGCGT GGGCACCATC
GCCGCGGGCG TGACCAAGTG CAAGGCCGAC CACATCGTGA TCGCCGGCCA TGACGGCGGC
ACGGGCGCCT CGCCCTGGTC GTCGATCAAG CACGCGGGCA CGCCGTGGGA ACTGGGTCTG
GCCGAAACCC AGCAGACCCT GGTGCTGAAC CGCCTGCGCG GCCGTGTGCG TGTGCAGGCC
GACGGCCAGA TGAAGACCGG CCGCGACGTC GTCATCGGCG CGCTGCTGGG CGCCGACGAA
TTCGGCTTCG CGACCGCGCC GCTGGTGGTC GAGGGCTGCA TCATGATGCG CAAGTGCCAC
CTCAACACCT GCCCGGTGGG CGTGGCCACG CAGGACCCGG TGCTGCGCGC CAAGTTCACC
GGCAAGCCCG AGCACGTCGT CAACTTCTTC TTCTTCATCG CCGAAGAAGC GCGCCAGATC
ATGGCGCAGC TGGGCATCCG CAAGTTCGAC CAGCTGATCG GCCGCGCCGA CCTGCTCGAC
ACCAAGAAGG CGATCCAGCA CTGGAAGGCC CGCGGCCTGG ACTTCAGCCG AGTCTTCCAC
CTGCCGGCGG TGCCGGCCGA TGTGCCGCGC CTGCATGTGT CGAACCAGGA TCACGGGCTC
GAGAAGGCGC TCGACAACAA GCTCATCACG AAGGCGAAAG CCGCGATCGA GAAGGGCGAG
AAGGTCCAGT TCATGGAGGA CGCGCGCAAC GTCAACCGCT CGGTCGGCGC GATGCTGTCG
GGCGAGCTGA TCAAGCACCA TCCGGACGGC CTGCCCGACC AGTCGATCTT CGTGCAGATG
GAAGGCACCG GCGGCCAGAG CTACGGCGCC TTCCTGGCCA ACGGCATCAC CTTTTACCTG
ATCGGCGAGG CCAACGACTA CACCGGCAAG GGCCTGTCGG GTGGCCGCAT CGTGGTGCGT
CCGTCGATCG AGTTCCGCGG CGATGCGTCG AAGAACATCA TCATCGGCAA CACCGCGCTG
TTCGGCGCCA CCAGCGGCGA GGCCTTCTTC CGCGGCGTGG GCGGCGAGCG CTTCGCGGTG
CGTCTGTCGG GCGCGACCAC GGTGGTCGAA GGCACCGGCG ACCACGGCTG CGAGTACATG
ACCGGCGGCA CGGCGGTCGT GCTGGGCAGG ACCGGGCGCA ACTTCGCCGC CGGCATGTCG
GGTGGCATCG CCTACGTCTA CGACGAGGAC GGCAGCTTCG CCAGCCGCTG CAACACCGCG
ATGGTGGCGC TCGACAAGGT GCTGTCGGCC GCCGAGCAGG AGAAGACGGT CGATCTCGCC
ACTTGGCACA AGGGCCAGAC CGACGAGGCC TTGCTCAAGA AGCTGATCGA GGACCATCAC
CGCTGGACCG GCTCGCTGCG CGCCCGCGAC ATCCTCGACA ACTGGACCGA GGCGCGTGGC
CGCTTCGTGA AGGTGTTCCC GCACGAGTAC AAGCGCGCGC TGGGCGAGAT GGGTGCCACG
CAGGCGGCCG ATGCCACGAT CGCCAAGGCC AAGGGCGGTG ACAAGGGCGA CAAGAAGGGC
ACGACCAAGG TCGTCCCGGC CAAGTAA
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| Protein sequence | MSQAASGPAS QAEIQSLAAH GLYDPAHEKD ACGVGFVAHI KGTKAHSIVE QGLKILENLD
HRGAVGADAL MGDGAGILLQ VPDELFRAEM AAQGVELPPL GEYGVGMIFL PKEHASRLAC
EQELERAVKA EGQVLLGWRD VPVDAAMPMS PTVRTTEPVI RQIFIGRGAD VIVPDALERK
LYVIRKTASA AIQALKLTHS REYYVPSMSC RTIIYKGLLL ADQVGKYYLD LQNPACTSAL
ALVHQRFSTN TFPEWPLAHP YRMVAHNGEI NTVKGNFNWM RAREGVMKSP VLGDDLKKLY
PISFEGQSDT ATFDNALELL TMSGYSLAHA AMMMIPEAWE QHTTMDERRR AFYEYHAAMI
EPWDGPAAMV FTDGKQIGAT LDRNGLRPAR YIVTDDDLVV MASEAGVLPI PENKIVRKWR
LQPGKMFLID FEQGRIVDDE ELKNQFASAK PYRQWIENVR IKLGTIPAGE TQAPVFAESL
LDRQQAFGYT QEDIKFLLAP MAANGEEGIG SMGNDSPLAV LSDKNKPLFN YFKQLFAQVT
NPPIDPIREA IVMSLDSFIG PKPNLLDINA VNPPMRLEVS QPVLDFADMA RLRGIERHTG
GKFKSYELNI VYPLAWGAEG VEAKLASLCA EAVDAIKSGH NILIITDRWM DRELVAIPAL
LALSAVHHHL VREGLRTTAG LVVETGSARE VHHFAVLAGY GAEAVHPYLA LETLADLHKE
LPGNLSADKA IYNYVKAVGK GLSKIMSKMG VSTYMSYCGA QLFEAIGLNK DLIAKYFRGT
PTQVEGIGVF QVAEEAIRNH RAAFGDDPVL ANMLDAGGEY AWRSRGEEHM WTPDAIAKLQ
HSTRANKFDT YKEYAQIVND QNKRHLTLRG LFEFKLDPSK AIPLEEVESA AEIVKRFATG
AMSLGSISSE AHSTLAIAMN RIGGKSNTGE GGEDPARYRN ELKGIKITDG TKVSDVIGAK
VIEADYTMKD GDSLRSKIKQ VASGRFGVTT EYLVSADQIQ IKMAQGAKPG EGGQLPGGKV
SEYIGRLRHS VPGVGLISPP PHHDIYSIED LAQLIHDLKN VNPASSISVK LVSEVGVGTI
AAGVTKCKAD HIVIAGHDGG TGASPWSSIK HAGTPWELGL AETQQTLVLN RLRGRVRVQA
DGQMKTGRDV VIGALLGADE FGFATAPLVV EGCIMMRKCH LNTCPVGVAT QDPVLRAKFT
GKPEHVVNFF FFIAEEARQI MAQLGIRKFD QLIGRADLLD TKKAIQHWKA RGLDFSRVFH
LPAVPADVPR LHVSNQDHGL EKALDNKLIT KAKAAIEKGE KVQFMEDARN VNRSVGAMLS
GELIKHHPDG LPDQSIFVQM EGTGGQSYGA FLANGITFYL IGEANDYTGK GLSGGRIVVR
PSIEFRGDAS KNIIIGNTAL FGATSGEAFF RGVGGERFAV RLSGATTVVE GTGDHGCEYM
TGGTAVVLGR TGRNFAAGMS GGIAYVYDED GSFASRCNTA MVALDKVLSA AEQEKTVDLA
TWHKGQTDEA LLKKLIEDHH RWTGSLRARD ILDNWTEARG RFVKVFPHEY KRALGEMGAT
QAADATIAKA KGGDKGDKKG TTKVVPAK
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