Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3394 |
Symbol | |
ID | 6163211 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3771257 |
End bp | 3772093 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641666169 |
Product | ABC transporter-related protein |
Protein accession | YP_001792417 |
Protein GI | 171060068 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1127] ABC-type transport system involved in resistance to organic solvents, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGCACGCCA CTGCTTCACT CGATGCCCCT TCGGTCGCCC CGCTGGTCGA ACTGCGTTCG GTCACTTGCG GATACGGCGA TCGGGTCATC CTGCGCGACG TGAACCTGAC GGTGCCGCGC GGTTCGGTGG TCGGCCTGAT GGGCACTTCG GGTGGCGGCA AGACGACGGT GCTGCGCCTG ATCGGGCGAC AGCTCGGCGC GATGTCGGGC CAGGTGCTGT TCGATGGCGT GGACATCGCC AGGCTCGATC GCCAGGGCCT GCACGAGGCG CGTCGGCGCA TGGGCATGCT GTTCCAGTTC GGCGCGCTGT TCACCGACCT GTCGGTGTTC GACAACGTCG CCTTTCCGTT GCGCGAGCAC ACCCGGCTCG GCGAGGAAAT GATCCGCGAC CTGGTGCTGA TGAAGCTCGA TGCGGTCGGC CTGCGCGGCG CCCGTGACCT GATGCCCAGC CAGATCTCGG GCGGCATGAG CCGGCGCGTG GCGCTGGCCC GCGCGATCGC GCTCGACCCC GAACTGATCA TGTACGACGA GCCTTTCGCC GGCCTCGACC CGATCTCGAT GGGCGTGGCC GCGCGCCTGA TCCGCGAGCT CAACGATGCG CTGGGTGTGA CCAGCATCGT CGTCTCCCAC GATGTCGACG AGACCTTCCT GATCGCCGAC CACATCGTCT TCATCGCCAA CGGCAGCATC GCCGCGCAGG GCACGCCCGA CGAGATGCGC GCCAGCGACG ATCCGCTGGT CCGGCAGTTC GTCAGCGCCG CGGCCGATGG CCCGGTGCGC TTCCATTACC CCGCGGTGCC TGCACTCGAC GATTACCGAC TGGGGGTGCC GCGATGA
|
Protein sequence | MHATASLDAP SVAPLVELRS VTCGYGDRVI LRDVNLTVPR GSVVGLMGTS GGGKTTVLRL IGRQLGAMSG QVLFDGVDIA RLDRQGLHEA RRRMGMLFQF GALFTDLSVF DNVAFPLREH TRLGEEMIRD LVLMKLDAVG LRGARDLMPS QISGGMSRRV ALARAIALDP ELIMYDEPFA GLDPISMGVA ARLIRELNDA LGVTSIVVSH DVDETFLIAD HIVFIANGSI AAQGTPDEMR ASDDPLVRQF VSAAADGPVR FHYPAVPALD DYRLGVPR
|
| |