| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3329 |
|---|
| Symbol | |
|---|
| ID | 6163716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3705631 |
|---|
| End bp | 3706902 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641666104 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001792352 |
|---|
| Protein GI | 171060003 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTCA ATTTCAAGCA CATCGCCGCT GGGGTCGCCC TGGCTTTCGG TGGCATCGCC
GGCGCCCAGG CCGCCACGAT CACCATCTCG TGCGGCTCCA ACGCTGCCGA CGTCGAGTTC
TGCGGCAAGT ACGCCGAGGA CTGGGGCAAG GCCAACGGCC ACACCGTCAA GATGTATTCG
TCCCCGGCCA GCACGACCGA CAACCTGGCC CTGCTGCGCC AGCAGTTCGC GGCCAAGTCG
TCCGACCTCG ACGTGATCAT GATCGACGTG GTCTGGCCCG GCGTGATCAA GGATCACCTG
GTCGACCTGA AGAAGTACAG CAAGGGCGCC GAGGCCAAGC ACTTCCCGGC CATCGTGGCC
AACAACACGG TCGACGGCAA GCTGCTGGGC ATGCCCTGGT TCACCGACGC CGGCCTGCTG
TTCTATCGCA AGGACCTGGT CGAGAAGTAC GGCCTGAAGG CGCCGGGCAC CTGGGAAGAG
ATGGCCACCG CGGCCAAGAA GATCCAGGAC GGCGAGCGCG CGGCCGGCAA GGCCGACTTC
CAGGGTTTCG TCTTCCAGGC CAAGGCCTAT GAAGGCCTGA CCTGCGACGC GCTCGAGTGG
GTGGCGAGCT TCGGCGGCGG CGAGATCGTC GACAAGGCCG GCAACATCAC CATCAACAAC
CCCGGTGCGG CCAAGGCGCT CGACACCGCG GCTTCGTGGA TCGGCACCAT CGCCCCGGCC
GGCGTGCTGA ACTACGGCGA GGAAGACTCG CGCGGCGTGT GGCAGAACGG CAATGCCGCC
TTCATGCGCA ACTGGCCTTA CGCCTGGTCG CTGGGTCAGG CCGCCGACAG CCCGATCAAG
GGCAAGATCG GCGTCGCAGC CCTGCCGGCC GGTTCGGGCG CCGGTGCCAA GAAGGCGGCC
ACGCTGGGCG GCTGGCAGCT GGCGGTGTCG AAGTACTCCA AGAACGTCGA CGCGGCCGCC
GCGCTGGCCA TGTACATGAC CAGCCCGGAG ATCCAGAAGA AGCGCGCCGT CGGTGGTTCG
TACAACCCGA CCATCCCCGA CCTCTACAAG GACGCCGACA TCGCCAAGGC GAACCCGTTC
ATGGTCGAGC TGCTCGACGT CTTCACCAAC GCCGTGGCCC GTCCGGCCAC CGCCACCGGC
CTGAAGTACC CGGAAGTCTC CAACGCGTTC TGGGACGCCA CCCACGAGGT GCTCGAGAAG
AAGACCACCG GCGCGGCCGC GGTCAAGAAG CTCGAAGGCA AGCTCAAGCA GATCAAGCGC
ACCAAGTGGT GA
|
|---|
| Protein sequence | MSFNFKHIAA GVALAFGGIA GAQAATITIS CGSNAADVEF CGKYAEDWGK ANGHTVKMYS
SPASTTDNLA LLRQQFAAKS SDLDVIMIDV VWPGVIKDHL VDLKKYSKGA EAKHFPAIVA
NNTVDGKLLG MPWFTDAGLL FYRKDLVEKY GLKAPGTWEE MATAAKKIQD GERAAGKADF
QGFVFQAKAY EGLTCDALEW VASFGGGEIV DKAGNITINN PGAAKALDTA ASWIGTIAPA
GVLNYGEEDS RGVWQNGNAA FMRNWPYAWS LGQAADSPIK GKIGVAALPA GSGAGAKKAA
TLGGWQLAVS KYSKNVDAAA ALAMYMTSPE IQKKRAVGGS YNPTIPDLYK DADIAKANPF
MVELLDVFTN AVARPATATG LKYPEVSNAF WDATHEVLEK KTTGAAAVKK LEGKLKQIKR
TKW
|
|---|
| |