| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3278 |
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| Symbol | |
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| ID | 6162581 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3640036 |
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| End bp | 3640977 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641666052 |
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| Product | polyprenyl synthetase |
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| Protein accession | YP_001792301 |
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| Protein GI | 171059952 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000293097 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCGCGG AGATGGCACA AGTCGACGCC GTGATTCACC GTCGCCTCGC CTCCGAGGTC
GCGCTGATCA ACCAGATCTC GCACTACATC GTCAGTGCCG GCGGCAAACG CATCCGGCCG
TTGCTGGTGC TGCTGTTCGC CCGAGCACTC GATTTCGACG GACCCGAGCG CTTCGAGATG
GCCGCGACGG TCGAGTTCAT CCACACCGCC ACGCTGCTTC ACGACGACGT CGTCGACGAA
TCCGACCTGC GCCGCGGCCG CAAGACCGCC AACGCGATCT TCGGCAACGC CGCCAGCGTG
CTGGTGGGCG ATTTCCTGTA TTCGCGTGCC TTCCAGATGA TGGTGTCTGT GAACCGTCTG
CGGGTGCTCG ACGTGCTGGC AGATGCCACC AACGTGATCG CCGAGGGCGA GGTGCTGCAG
CTGCTCAACA TGCACGACCC CGACATCAGC ATCGAGGCCT ACCTGCGCGT GATCCGCTAC
AAGACGGCCA AGCTTTTCGA AGCCAGCGCC CGCACCGGCG CCGTGCTGGC CGGCGTCAGC
GCACCGCTCG AAGACAGCTG CGCGTCATAC GGCCGCTGCC TCGGGACCGC CTTCCAGTTG
ATCGACGATC TGCTCGACTA CGAAGGCGCC ACCGCCCAAT TGGGCAAGAA CGTGGGCGAC
GACTTGCGCG AGGGCAAGCC GACCATGCCC CTGCTGCTGG CGATGCAGCA CGGCAGCAGC
ACACAGCGCG ATCTGATCCG CCATGCAATC GAGCACGGCG AGGTCGAGCG CCTGCCTGAA
ATCATCGAGA TCGTGCGCAG CACAGGCGCA CTGGAAGCCA CTCGCCAGGC CGCCAGGGAT
GAAGCCAACA AGGCTCGTGC ACATCTTTCT TCTCTACCCT CTTCCCAGTT CAAGGAAGCA
CTGTTATACT TATGTGCTCA GTCTGTTGAA AGAAGTTCTT AA
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| Protein sequence | MAAEMAQVDA VIHRRLASEV ALINQISHYI VSAGGKRIRP LLVLLFARAL DFDGPERFEM
AATVEFIHTA TLLHDDVVDE SDLRRGRKTA NAIFGNAASV LVGDFLYSRA FQMMVSVNRL
RVLDVLADAT NVIAEGEVLQ LLNMHDPDIS IEAYLRVIRY KTAKLFEASA RTGAVLAGVS
APLEDSCASY GRCLGTAFQL IDDLLDYEGA TAQLGKNVGD DLREGKPTMP LLLAMQHGSS
TQRDLIRHAI EHGEVERLPE IIEIVRSTGA LEATRQAARD EANKARAHLS SLPSSQFKEA
LLYLCAQSVE RSS
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