| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3253 |
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| Symbol | |
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| ID | 6163579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3609832 |
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| End bp | 3611025 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641666027 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001792276 |
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| Protein GI | 171059927 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCCT TTTCACTCGT TTCGCGCCGG CTCGCGCTGG CCTTGCTGGG CGCCGTGCTG
ATCGGCGCGC TGGCTTTCGT GGTGATGCGC GCGGGCCCGC TGGCGCCGAC CCGCGTGACG
GTCGTGAAGG TGAGCGAAGG CCGCTTCGCG CCGGCGCTGT TCGGCATCGG CACGGTCGAG
GCACGCCGCA GCTACCTGAT CGGGCCGACC GCCGCCGGGC GGGTGCGCGT GGTGGCCGTC
GACGTGGGTG ACACGGTGCG GCCCGGCCAG TTGCTGGCCG AGATGGACCC GGTCGATCTC
GACCAGCGCG TGGCCGCGCT CGAGGCCTCG CGCGCGCGGG CCGGCAGCGC GGTGGCTGCG
GCGCAGGCCC AGCACCAGGA CGCCACGGCG CGGCGCGAAC TGGCCATCGT CAACGCCCGC
CGCTACATCG AACTGGGCGA GCAGAACTTC ATCAGCGTCG GCGCGGTCGA GGCCCGGCGC
CAGGAGCAGA CCTCCGCCGA GGCCGGTGTG AGCGCCGCCC AGGCCAACCT CGATGCGGCG
CGGCAGGACC TCCGGCGCCT GGCCGCCGAG CAGGCCGCCT TGCACCAGCA ACGCACCAAC
CTGCGCCTGC TGGCGCCGGT GGCCGGCGTG GTCATCGGCC GCGATGCCGA GGCCGGCTCC
ACTGTGGTGG CGGGCCAGGC GGTGATCCGG CTGATCGAGC CGACGTCGCT GTGGGTCAAG
GTGCGATTCG ATCAGGGCCG CTCGGCCGGC CTGGCCGCGG GGCTTCCGGC CGCGGTCGTG
CTGCGTTCGC AGCCCTCGCA GCCGCTGGCC GGCCAGGTCG TGCGAGTCGA GGCGGTGAGC
GACAGCGTGA CCGAGGAGCG CGTCGCCCTG GTGGCCTTCG ATCACCTGCC GGCCGGTGTG
TCGGTGGGTG AGCTGGCCGA GGTGACGCTC ACGCTGCCCG CCACCGCGCC GGCGCTGCTG
CTGCCCAATG CCGGCCTCCA GCGCCAGGGC GAGCAGGTCG GTGTCTGGCG GGTCGACGGC
AGCGGCGGCC TGCACTTTGC CCCGGTGCGG GTCGGCCGGA GCAGCCTCGA CGGCCAGGTG
CAGGTGCTCG ACGGTCTCGA CGCCGGCGAC GCGGTGGTGG TCCACAGCGA GAAGGCGCTC
ACCGCCCGCA GCCGCATCCA GGTGGTCGAT GCCCTGACGG GGCTGCTGCG ATGA
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| Protein sequence | MKPFSLVSRR LALALLGAVL IGALAFVVMR AGPLAPTRVT VVKVSEGRFA PALFGIGTVE
ARRSYLIGPT AAGRVRVVAV DVGDTVRPGQ LLAEMDPVDL DQRVAALEAS RARAGSAVAA
AQAQHQDATA RRELAIVNAR RYIELGEQNF ISVGAVEARR QEQTSAEAGV SAAQANLDAA
RQDLRRLAAE QAALHQQRTN LRLLAPVAGV VIGRDAEAGS TVVAGQAVIR LIEPTSLWVK
VRFDQGRSAG LAAGLPAAVV LRSQPSQPLA GQVVRVEAVS DSVTEERVAL VAFDHLPAGV
SVGELAEVTL TLPATAPALL LPNAGLQRQG EQVGVWRVDG SGGLHFAPVR VGRSSLDGQV
QVLDGLDAGD AVVVHSEKAL TARSRIQVVD ALTGLLR
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