| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3229 |
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| Symbol | |
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| ID | 6162744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3581071 |
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| End bp | 3583698 |
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| Gene Length | 2628 bp |
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| Protein Length | 875 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641666003 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001792252 |
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| Protein GI | 171059903 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACAAAC ATCGCGTGCG CCCAGCTAGG GCGCCGAAAC TCAACCAGAT CGCCGCGCTG
CTGACCTCGT CGGCCTTCGC GGTCCTGCTC GCCGGTCCGG TACAGGCCCA GGGCCCTGTG
GCGGCCGAGG ACAAGGCCGC CGAGGCCACC CAGGCCGACG CAGCCAAGGC AGAAGCATCG
GCCGCCACCG GCGCGGCAGG GGCAGCCGTC GCGGGCAAGC GAGACAAGGG CGACGTCGTC
GGCCTGGATC GTGTCGTCGT CACCGGCACC AGCCAGAAGA AGTCGAAGAT GCGCAGCTCG
GTGTCGGTGA CCGACGTCGA CCAGCAGCAG GTCGCCGACT TCGGTGCCCG CTCCGAAGCC
GACGTGCTGC ACCTGATCCC GGGTATCCGG GCTGAAAGTT CGGCCGGTCC GGGCGGCAAC
TCCAACATCA CGGTGCGCGG CCTGCCGATC TCGTCGGGCG GCTCGAAGTT CGTCCAGCTC
CAGGAGGATG GCCTGCCCGT GGTCGAGTTC GGCGACATGA ACTTCGGCAA CAACGACTAC
TTCATCCGCT TCGATAACAA CGTCGACAGC ATCCAGACGC TGCGGGGCGG CTCGGCGGCA
ACCTTCGCCT CGCACGCCCC GGGCGCGGTC ATCAACTACA TCAGCAAGAC CGGCAAGGAG
AAGGGCGGAT CGATCGGCCT GACACGTGGC CTGAACTTCG ACGAGACCCG TGTCGACGGC
GACTACGGCG GCAAGCTCAG TCCGAACCTG CGCTTCCACA TCGGCGGCTA CTTCCGCGAC
GGCGAAGGCC CGCGTGCCAA CGACACCCAT GCCCTGCGTG GCCATCAGAT CAAGGGCAAT
CTGACCAACG CCTTCAACGG CGACAAGGGC TATCTGCGGG TCTCGTTCAA GTCCCTCGAC
GAGAGTGCAC CGACCTACAC CAGCATGCCG GCGCGTGCTT CGTTGAGCGG CAACACGGTC
ACCGGCATGA GCTCGATCAA CGGTTTCGAC ATCCGCAAGG ATTCGCAGCT GTCGATCTAC
AACACCAGCA TGCCGACGAT CGGCCCGGTC GGCACCAGCA CCGGCATGGC CGACGTGTCC
AGGGGCATCA CGGTCAAGTC GAAGACGGTG GGTCTGGAGT TCCACAACGA ACTGCCGACC
GGGTTCACGA TCGACAACAA GTTCAAGATC AGCCGCACCT CGAGTGCCTT CCAGACCCAG
TTCTGGGGTG CCAACACGCT GGGTGGCATG CTCGGCAACT TCGGCGCCGG CTCGTCGGCG
GTGTACTTCA ACGGCCCGAA GGCCGGCCAG GCCGTCACCG ACACCAACCT GCAGACCGGG
CTGGTGTCGC AGAGCGCGGC GATCAACCAG CAGTCGCCCG ACATGGGCCA CTACGCCAAC
GACCTGAGCC TGAGCAAGGC CTTCGAGCTG AGCGGCAACA AGCTCAACAC CAAGCTGGGC
TACTACCGTT CCAACCAGGA CATCGTCCAG GAATGGCAGA TCAGCGAGCG CCTGATGGAG
ATCGGCCGCA ACGGCGCGCT GATCGACGTC AGGGATGCCG CCGGCGCGAT GCTGACCACC
GCCGGCCTGA CGGGCTACAA CAACCAGTGG GGCGGCTGCT GCGCCCGCAG CGTCAATGCG
CACTACACCA CCGACGCGCC CTACCTGTCG CTGGCGCTCG AAAGCGGCCC GGTCGACCTG
GAGGCCAGCC TGCGCCACGA CATGGTCCGT GCCACCGGCA GCTATGCCGG CGGCAAGCAG
GTCGCCGGCG GTCTCGACGT CAACCGGGAT GGGGTCATCG ATGGTGCCGA GCGCAACGTC
TGGTTGGTTG ACACCAGCAA CCCGAGTCCG ATCAACTACA AGGTCAACTA CACCTCGTAC
TCCCTGGGTG CCAACTACCG CCTCAGCAAC GACACCAGCA CGTTCGCGCG TGTCAGCAAG
GGCGGTCGGG CCATCGCCGA CCGCCTGCTG TTCTCGCCTT TCGTGAACTC GGTGACCGGT
GCCCTGATGG CCGGCCTGGA GGCCCAGGCG GTCGCGACCG TCAAGCAGCG TGAAATCGGC
GTGAAGCACC GCGGCAGCCG CGACTGGGGC AGCTACGGCC TGTTCGCCAC GCTCTTCACG
GCGACGGTGG ACGAGTACGA CTACGACCAG ACGCGCACCA TCGGTCCGAA GCTGAACGTG
GTGGGGACCC GGGCCCGCGG CCTGGAGCTC GAGTCGGCGC TGAGCATCGG CAACTTCGCG
ATCAATGCCA ATGCCGTCTA CACCGACCTG AAAATCACGA AGGACCTGGT CGGCACGGCG
CAAGGGGCCA GCACGGTGGG CAAGGTGCCG GGTGGCGTGC CCACGGTGCT CTATTCGATC
TCGCCGCGCT ACACCTTCGG CCCGGTGACC ACCGGCGCGT CGATTTTCGG CCAGACCTCG
GTGTGGAACA ACACCTTCAA CACCACGAAG GTCGCGGGCC GCTACATCGT CAATGCCTTC
GTCGGCTACG AGATGGCCGA GAACACGACG CTGACGCTGA ACGCCAGCAA CCTGTTCGAC
AAGGTCGCCT CGTCGGGCGG CGTGGGTGGC CCGAACGCCC AGAACATCGT CGAACTGCGG
CCGGAAACGG GCCGATCGTT CACGGCGTCG ATCCGACATG CGTTCTGA
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| Protein sequence | MHKHRVRPAR APKLNQIAAL LTSSAFAVLL AGPVQAQGPV AAEDKAAEAT QADAAKAEAS
AATGAAGAAV AGKRDKGDVV GLDRVVVTGT SQKKSKMRSS VSVTDVDQQQ VADFGARSEA
DVLHLIPGIR AESSAGPGGN SNITVRGLPI SSGGSKFVQL QEDGLPVVEF GDMNFGNNDY
FIRFDNNVDS IQTLRGGSAA TFASHAPGAV INYISKTGKE KGGSIGLTRG LNFDETRVDG
DYGGKLSPNL RFHIGGYFRD GEGPRANDTH ALRGHQIKGN LTNAFNGDKG YLRVSFKSLD
ESAPTYTSMP ARASLSGNTV TGMSSINGFD IRKDSQLSIY NTSMPTIGPV GTSTGMADVS
RGITVKSKTV GLEFHNELPT GFTIDNKFKI SRTSSAFQTQ FWGANTLGGM LGNFGAGSSA
VYFNGPKAGQ AVTDTNLQTG LVSQSAAINQ QSPDMGHYAN DLSLSKAFEL SGNKLNTKLG
YYRSNQDIVQ EWQISERLME IGRNGALIDV RDAAGAMLTT AGLTGYNNQW GGCCARSVNA
HYTTDAPYLS LALESGPVDL EASLRHDMVR ATGSYAGGKQ VAGGLDVNRD GVIDGAERNV
WLVDTSNPSP INYKVNYTSY SLGANYRLSN DTSTFARVSK GGRAIADRLL FSPFVNSVTG
ALMAGLEAQA VATVKQREIG VKHRGSRDWG SYGLFATLFT ATVDEYDYDQ TRTIGPKLNV
VGTRARGLEL ESALSIGNFA INANAVYTDL KITKDLVGTA QGASTVGKVP GGVPTVLYSI
SPRYTFGPVT TGASIFGQTS VWNNTFNTTK VAGRYIVNAF VGYEMAENTT LTLNASNLFD
KVASSGGVGG PNAQNIVELR PETGRSFTAS IRHAF
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