| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3173 |
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| Symbol | |
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| ID | 6161595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3503641 |
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| End bp | 3505731 |
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| Gene Length | 2091 bp |
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| Protein Length | 696 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665948 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001792197 |
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| Protein GI | 171059848 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.000648957 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAACTCCC CCGTGATGGA CACCGATCTC TTCTTCGACG AAGCGCCTGC GGCCCGGCGG
ATGGCCTGGC GCGACACCCT GCGCGGCCTC AGCCCGGGCC GCTGGTTCGA GACCCTGAAG
ATGCGCCTGG CGGTCGGCGC GCTGGCGGGC CTGTTCGCGG GCATGGCGTT CACGGCCTGG
TACATGGGCG ACGTCGCGGA GGCCCAGCTG ATCCAGCGCG CCCGCGAGCG CGAGCACGTC
GAGGCACTGC GCACCGCGAA GGTCATCAGC CGGCGCATCG TCGAGCTGCA GCGCGCCCTG
CAGGTCGTCG GTGAACAGCT CGACCGCACG ACGCTCCAGG ATCCGCTCAA GCTGGCCGCC
TTCTTCGAGC AGCGACCGGT GCTGCGCTCG ATGTTCGCCA ACGTCTTCGC CACCGGCGCG
GACGGCCGGG TGCGCATGCT CATCGACCCG GCCGGCACGC GCACGCCGCT GACGTCGATC
GCCGACCGCG AGTACTTCAA GCGGGCCGTC GCGACCCGCC TGGCGGTGAT CTCCGAACCG
ATCCGGGGAC GCATCTCCAA CGAGCCGGTC ATCATGCTGG TGCATCCGGT GAGCGATGCC
GCGGGCGTCT GGGGCGTCAT CGGCGGCAGC CTGCGGCTGG CCAGCCGCGA CCTGATCGAG
GATCTGGCCG ATACCCAGGT GGCCGACCTG TCGACCACGA TCGTGGTGTC CGACGCAGCC
GGCCGCATCC TGGCTCATCC GCAGCGCACC CGCCTGCTCG ACAGCGTGGC GGCCGAGCCG
CACCTGGCGG CGGCGGTCGC GCAATGGAAG CTGGACGCCG CCACGCACGC CTTCGAATCC
GGCACCTGGA TCGACGCCAA GGGCCTGGTG ACGATGGCCG GCGATGCATC GACCGGCTGG
CGCGTCTGGC GCACGATTCC GCGCGACGCG CTGATCGCGC CGCTGGTGCA GGCCCGTTCG
CATGCGCTCC AGGTCGCGGC GCTGTTTGCC GTCGTGATGG CCGGTGCGCT GGGCGCCTTC
ATTGCCTGGC AGCTGCGCCC GCTGGCGCGC CTGGAACATC AGGCCGCCCA TCTGCTGGCC
GGCGACGAGG GCCTGGCGTG GCCGGACTTC GACGGCGAGA TCGGCCAGCT GGCGCGCACC
TTGCGCCACC TGCTGGCCGA GCGGGCACAG GTCGAACGCT TCAACGCCCA GGTGCTGCAG
AAGCTCAGTT CGGTGCTGTC GGCCTCGCCG GTCGGGCTGG CGTTCACGCG CCATCAGCGC
TTCGAGCTGG TCAGCGCCGA ATGCTGCCGC CTGCTCGGCC GCAGCGAGGA GCAACTGGTC
GGCCAGCTGG CGCAGGTCAT CTACGCCTCG AACGAGGACT ACGTGAACCT GGGGCCGCTG
GTGGGCGCCG CATTCGCGGA CGGCCAGCCG TACGTCGGCG AATGGCAGCT GCTGCGCGCC
GACGGGACGG TGTTCTGGGC CTGCCTGCAC GCACGGCCGG TCTCCGTCGA CGACCCCTCG
GCGGGCACGA TCTGGAGCCT GTACGACGTC AGCGAGCAGG TCCAGGCCCG GCGCCAGCTC
GAACATGCGG CCGACCACGA CCCGCTCACC GGCGTCGTCA ACCGCAAGGG CTTCGGGCGG
GCGATCTCGC AGGTGCATGC CCGCCAGCCC GACACGCGCC CGGCGTCGGT GCTGATGATC
GACCTGGACC ACTTCAAGCC GATCAACGAC ACGGCCGGGC ACGCCGCCGG CGACGCGATG
CTCAAGGCCG TGGCGCAGAT GATCACCTCG CAGGTGCGCG CCAGCGACAC CGTGGCCCGG
CTCGGCGGCG ACGAGTTTGC CGTGCTGCTG CCCGGCTGCG ATCAGCGCCG TGCACTGCAG
GTGGCCGACA AGGTGCAGGG CGCCGTGGCC GACCTGAGCC TGACGTGGGA GGGCCGTGCC
CTGCGCGTGG GCACCAGCAT CGGTGTCGCC GAGCTGACGT CCGCCCACGA CAGCGACGCG
GCCTGGCTGG CCGCTGCCGA CGCGGCCTGC TACGCGGCCA AGCATGGCGG CCGAGGCCGG
GTCTGTGCCG CCTCGCCGGT CAAGCTGGTC GAACGGGATC GGGCGGCCTG A
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| Protein sequence | MNSPVMDTDL FFDEAPAARR MAWRDTLRGL SPGRWFETLK MRLAVGALAG LFAGMAFTAW
YMGDVAEAQL IQRAREREHV EALRTAKVIS RRIVELQRAL QVVGEQLDRT TLQDPLKLAA
FFEQRPVLRS MFANVFATGA DGRVRMLIDP AGTRTPLTSI ADREYFKRAV ATRLAVISEP
IRGRISNEPV IMLVHPVSDA AGVWGVIGGS LRLASRDLIE DLADTQVADL STTIVVSDAA
GRILAHPQRT RLLDSVAAEP HLAAAVAQWK LDAATHAFES GTWIDAKGLV TMAGDASTGW
RVWRTIPRDA LIAPLVQARS HALQVAALFA VVMAGALGAF IAWQLRPLAR LEHQAAHLLA
GDEGLAWPDF DGEIGQLART LRHLLAERAQ VERFNAQVLQ KLSSVLSASP VGLAFTRHQR
FELVSAECCR LLGRSEEQLV GQLAQVIYAS NEDYVNLGPL VGAAFADGQP YVGEWQLLRA
DGTVFWACLH ARPVSVDDPS AGTIWSLYDV SEQVQARRQL EHAADHDPLT GVVNRKGFGR
AISQVHARQP DTRPASVLMI DLDHFKPIND TAGHAAGDAM LKAVAQMITS QVRASDTVAR
LGGDEFAVLL PGCDQRRALQ VADKVQGAVA DLSLTWEGRA LRVGTSIGVA ELTSAHDSDA
AWLAAADAAC YAAKHGGRGR VCAASPVKLV ERDRAA
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