Gene Lcho_3147 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3147 
Symbol 
ID6163319 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3474886 
End bp3475395 
Gene Length510 bp 
Protein Length169 aa 
Translation table11 
GC content67% 
IMG OID641665922 
Productformaldehyde-activating enzyme 
Protein accessionYP_001792172 
Protein GI171059823 
COG category[S] Function unknown 
COG ID[COG1795] Uncharacterized conserved protein 
TIGRFAM ID[TIGR03126] formaldehyde-activating enzyme 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAAAA TCGATCGCAT GATGGTGGGC GAATCGCTCG TCGGTGAAGG CAACGAGGTC 
GCGCACATCG ACCTCCTGAT CGGCCCGCGT GGCAGCGCCG TCGAAACCGC TTTCGCCAAC 
GCGCTGACCA ACAACAAGGA CGGCTTCACC TCGCTGCTGG CAGTGCTGGG CCCCAACCTG 
CTCACCAAGC CGGCCACCGT GCTGTTCAAC AAGGTGACCA TCAAGGGCGC CAAGCAGGCG 
GTGCAGATGT TCGGCCCGGC CCAGCGCGGC GTGGCGATGG CGGTGGCCGA CTGCGTCGAG 
GCCGGCACCA TCCCGGTCGC CGAGGCCGAC AACCTGTTCA TCTGCGTGGG CGTGTTCATC 
CACTGGCTGG CCGACGACGA CCGCAAGATC CAGGACTACA ACTACGCCGC CACCAAGGAG 
GCGATCGAGC GCGCCGTGGC CGGCAAGCCC ACCGCGGCCG AAGTGGTTGC GGCCAAGGGC 
GGCTCGTCGC ACCCGTTCGC CACCCATTGA
 
Protein sequence
MAKIDRMMVG ESLVGEGNEV AHIDLLIGPR GSAVETAFAN ALTNNKDGFT SLLAVLGPNL 
LTKPATVLFN KVTIKGAKQA VQMFGPAQRG VAMAVADCVE AGTIPVAEAD NLFICVGVFI 
HWLADDDRKI QDYNYAATKE AIERAVAGKP TAAEVVAAKG GSSHPFATH