| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3145 |
|---|
| Symbol | |
|---|
| ID | 6162904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3471909 |
|---|
| End bp | 3474026 |
|---|
| Gene Length | 2118 bp |
|---|
| Protein Length | 705 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641665920 |
|---|
| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
|---|
| Protein accession | YP_001792170 |
|---|
| Protein GI | 171059821 |
|---|
| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTCA GTCTTCTTGG AACCGGGCGG CACGCCGAAC GTGTTTTTGA CGTGGTGCGC
GGCAGCTTCG GCGAAGAGAG CAACGACGTC GTCGCACGCT CGTGGCGGCG CTGCATGGAC
GAGTACCTGC TGCACCCCGA CCGCCCGCGC GACCTGCGCG CGCTCGACCC GGCCGCGATC
GAGGCCCGGC TGGACCGCAT GTCCACGCTG GTCGACTGCG CCCGCCACGA GATGGCCACG
CTCTACCAGC AGCTCGCCGA CGACGAATCG GCGGTGGTGC TGACCGACAC CGACGGCGTG
ATCCTGCACA TGGTGGCCTC GCCCGATTTC GCCCGCGAGG TCGCGCCGCT GGGCCTGCGC
ACCGGCGTGG TCTGGAGCGA GACCGAAGCC GGCACCAACG GCATGGGCAC CTGCCTGGCC
GCCGCCTGTC CGGTGTCGGT GCAGCGCGAC GAACATTTCT ACACCCAGTT CACCGGCCTG
ACCTGCTCGG CCGTGCCGGT CTACAACCCC TCGGGCGAGA TGGCCGCGGT GCTGGATGTG
TCGAGCCGCT CCACGCTGAT GCAGCAGCAC CTGCTGGTGC TGCTGGGCAT GACCGCGCGC
ATGATCGAGA ACCGCCTGAT CGACCAGTGT TTCCGCCACG CCCACCCGCT GCATTTCCAC
AGCCGGCCGG AGTTCGTCTA CACGCTGCAC GAGGGGCGGC TGGCGGTGTC CGACGACGGC
CGCATCCTCG CGGCCAACCG CAGCGCGCTG TTCCAGCTCG GCCTGCAGTC GGTCAACGAC
ATCCGCTCGC GCCGCATCGA GGACATCTTC CAGACCTCGC AAGAAGACCT GCTGCAGCGC
AGCAGCCTGT CGTCCTTCCA CCCGGTCGTG ACCTACCGCG CCAACGCCGC CAACCGCTTT
TTCGCCGTGA TGCGCCGCCC GGCGCTGGAG GCCGGTGCCT TGCAGGGCCA GGGCGCCGTG
CTGATCCACC CGGCCGGGCC CGGCCGCAGC GTGGCGACCC GCGCGGCGGC GCAGGCTGCG
GCGGCGCGCC CGCCCGGCAC CGTGGCCACG CTGGCCGACC CGCAGCTGGC GCGCCACCTC
GATGTGGCGC GGCGTGTCAT CGCCCGCCAG ACGCCCGTGC TGCTGTGCGG TGAAACGGGC
TCGGGCAAGG AGGTCTTCGC GCGCCTGGTG CACGAGGGCA GCCCGAACGC GAACGGCGCC
TTCGTCGCCG TCAACTGCGC CAGCCTGCCC GAGAGCCTGA TCGAGGCCGA GCTGTTCGGC
TATCGCGCCG GCGCCTTCAC CGGCGCGCAG CGCAGCGGCC GGCGCGGCAA GATCCTGCAG
GCCGACGGCG GCACGCTGTT CCTCGACGAG ATCGGCGACA TGCCGCCCGA GCTGCAGGCC
CGCCTGCTGC GGGTGCTCGA AGAGCGCCAG GTCACGCCGC TGGGCTCTGA GGAAACGATC
TCGGTGCAGT TCCAGCTGCT CAGCGCCAGC CACCGCAACC TGCTCGATCT GGTCGAGAAG
GGCGCCTTCC GCGAAGACCT GTACTACCGG CTGGCCGGGG TCGAGGTCAA CCTGCCGGCC
CTGCGTGAAC GCAGCGATCG CCACGAGCTG ATGCGCAGCC TGCTGGTGGC CGAAGGTGGC
ACCGACGCCC GCCTGTCGCC CGCGGCCGAA GACCTGCTGA TGGCCTACCC CTGGCCCGGC
AACGTGCGCC AGCTGCGCCA CGTGCTGCGC TCGGCCTGCG CGCTGGCCGA CGGCGAGCCG
ATCGAGGTCG AGCACCTGCC GCTGGCGCTG CGCAAGACCG TCGCGGCCGG TGAGTACGGT
GTGAGTGGCG CCCTGCCTTC GATTGCCAGC CCGGCCGTTG TGGCGCGCCT GGTCGCACCG
CCTCACGACG CGGCACCGAA CTTGCCTGCG GAGGGTGACA GCGCCGGCCT TGCTGCCGAT
CACCGCGCCG ACGAGCCCGC CGAGGAGCCG CCCCTCAAAC TCAACCCCAT CCTTGCCAAC
GAGCGGCAGG TGCTGCTGAA GATGCTCGAA CAGCACCGTT GGAATGTGAG CAACGTCGCC
AAGGCGTTCG ATGTCAGCCG CAACACCCTG TACCGAAGAC TGCACAAACT GCACATCCGG
ATCTCCCACC CCGACTGA
|
|---|
| Protein sequence | MAVSLLGTGR HAERVFDVVR GSFGEESNDV VARSWRRCMD EYLLHPDRPR DLRALDPAAI
EARLDRMSTL VDCARHEMAT LYQQLADDES AVVLTDTDGV ILHMVASPDF AREVAPLGLR
TGVVWSETEA GTNGMGTCLA AACPVSVQRD EHFYTQFTGL TCSAVPVYNP SGEMAAVLDV
SSRSTLMQQH LLVLLGMTAR MIENRLIDQC FRHAHPLHFH SRPEFVYTLH EGRLAVSDDG
RILAANRSAL FQLGLQSVND IRSRRIEDIF QTSQEDLLQR SSLSSFHPVV TYRANAANRF
FAVMRRPALE AGALQGQGAV LIHPAGPGRS VATRAAAQAA AARPPGTVAT LADPQLARHL
DVARRVIARQ TPVLLCGETG SGKEVFARLV HEGSPNANGA FVAVNCASLP ESLIEAELFG
YRAGAFTGAQ RSGRRGKILQ ADGGTLFLDE IGDMPPELQA RLLRVLEERQ VTPLGSEETI
SVQFQLLSAS HRNLLDLVEK GAFREDLYYR LAGVEVNLPA LRERSDRHEL MRSLLVAEGG
TDARLSPAAE DLLMAYPWPG NVRQLRHVLR SACALADGEP IEVEHLPLAL RKTVAAGEYG
VSGALPSIAS PAVVARLVAP PHDAAPNLPA EGDSAGLAAD HRADEPAEEP PLKLNPILAN
ERQVLLKMLE QHRWNVSNVA KAFDVSRNTL YRRLHKLHIR ISHPD
|
|---|
| |