| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3096 |
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| Symbol | |
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| ID | 6162697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3427135 |
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| End bp | 3428868 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641665871 |
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| Product | pilus (MSHA type) biogenesis protein MshL |
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| Protein accession | YP_001792121 |
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| Protein GI | 171059772 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL
[TIGR02520] type IVB pilus formation outer membrane protein, R64 PilN family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 69 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCATTC CATCCACGCT GGCGTCCGCG GCGCTGAGCC TGCTGTTGCT GATGGCACCG
GCCGCGGCCC GCAGCGCCGA ACCACGCTTC GACCTGGCAC TCAACAACGC GCCGGCCGCA
CAGGTGTTCA TGCAGCTGTC GATGGGCTCG AACTGGCAGG TGCTGGTCGG CCCCGAGGTG
GCCGGCCACA TCACGCTGCA CCTGCGCGAC ACCAGCGTGC CCGAAGCGCT GGAGGCGCTG
CGCGAGCTCT ACGGCTACGA CTACCGCATC AGCGGGCGGC GCATCTACGT GCAGCCCAAC
ACCGTGCAGA CACGGCTGTT CCACGTCAAC TACCTGCCCG GGCGGCGCCA GGGCACCAGC
GACCTGCACG TGTCGTCGGC CTCGATGACC CACGGCGGCG GCGGCTCGGG CAGCAACGCC
GGCCAGGGCG GCAACACACC CGCGTCCTAC GGCAGCAGCA GCAACAACAC GGCCGGCAAC
GGCAGCGGGC TCAACAACCG CAGCGACGAC AGCGCCTACG TGCGCACCAG CTCCGACGCC
GATTTCTGGC GTGACGTGCA GGCCTCGCTG CAATCGATGC TCGCGATCGG CGAGAGCGGC
GGCGAAGCTC CCGCCGCAGC CGCCGCCAAC CCGCAGCAGC GCCGCAGCCT GGTACTGAAC
CCGGCCGCCG GCGTGATCGT GGTGCGTGCC ACGCCGGCCG AGCTGCGCCA GGTGGCCGAC
TACCTGAAGG CGGTGCAGGT CAGCATCGAA CGCCAGGTGA TGCTCGAAGC CAAGATCCTC
GAAGTCGAGC TCGGCAGCGA GGCGCAGTCG GGCATCAACT GGAGCGCCTT CGGCCGCGCG
CTCGGCGGCG CGCTCAGCAT CGGGCTGGTG CAACCGGGTG TCACGCTGGC CGGCAGCGGC
GCGCTGACGC TGGGCGGCAC CTCGATCACG CCGGGTGGCA ACCTCGCCGC CAGCAGCAGC
GGGGCGCCGT TCTACGGGCT GGCCTTCCAG TCGGCCAACT TCGCCGCGCT GCTGAGCTTT
CTCGAATCGC AGGGCAAGGT GCAGGTGCTG TCGAGCCCGC GCATCGCCAC GCTCAACAAC
CAGAAGGCGG TGCTCAAGGT CGGCAGCGAC GAGCTCTACG TCACCGGCGT GTCGTCGACC
ACCACCGCCA CCGGCAGCAC GTCGACGTCG ACGCCGTCGG TGGTGCTGCA GCCCTTCTTC
TCGGGCATCG CGCTCGACGT CACGCCGCAG ATCGACGATC AGGGCCAGGT GATGCTGCAT
GTGCACCCGG CCATCAGCAC CGTGAGCGAG AAGCAGAAGA ACATCAACCT CGGCTCGCTC
GGCAGCTACC AGCTGCCGCT GGCCAGCAGC ACCGTCAACG AGACCGACAG CATCGTGCGG
GTGCGCGACG GCCAGATCGT CGCCATCGGC GGCCTGATGA GCCAGGAGCA GCGCGAAGAG
CGCAGCGCCG TGCCCGGCCT GGGCGACGTG CCGCTGGTAG GCGGCCTGTT CCGCCAGACC
AGCACCGTGA TGCGCAAGCG CGAGCTGGTG ATCCTGATCA AGCCGACCGT GATCCGTGCC
GACGGCCCGT GGCCCGAGGC CGACACCCAT CAACCCGCGA GCCAGCTGCA ACCGTGGCGG
CCCGATGCGA TGAGCCAGCT GCAACTGCCG CAGGCCGCGA CCGACAGCCC GAGCGACGCC
GCCACCGCGC CACGCCCGGC GTTGACGATC AACGGCCCGG TCGCGGCCCA CTGA
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| Protein sequence | MPIPSTLASA ALSLLLLMAP AAARSAEPRF DLALNNAPAA QVFMQLSMGS NWQVLVGPEV
AGHITLHLRD TSVPEALEAL RELYGYDYRI SGRRIYVQPN TVQTRLFHVN YLPGRRQGTS
DLHVSSASMT HGGGGSGSNA GQGGNTPASY GSSSNNTAGN GSGLNNRSDD SAYVRTSSDA
DFWRDVQASL QSMLAIGESG GEAPAAAAAN PQQRRSLVLN PAAGVIVVRA TPAELRQVAD
YLKAVQVSIE RQVMLEAKIL EVELGSEAQS GINWSAFGRA LGGALSIGLV QPGVTLAGSG
ALTLGGTSIT PGGNLAASSS GAPFYGLAFQ SANFAALLSF LESQGKVQVL SSPRIATLNN
QKAVLKVGSD ELYVTGVSST TTATGSTSTS TPSVVLQPFF SGIALDVTPQ IDDQGQVMLH
VHPAISTVSE KQKNINLGSL GSYQLPLASS TVNETDSIVR VRDGQIVAIG GLMSQEQREE
RSAVPGLGDV PLVGGLFRQT STVMRKRELV ILIKPTVIRA DGPWPEADTH QPASQLQPWR
PDAMSQLQLP QAATDSPSDA ATAPRPALTI NGPVAAH
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