| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3067 |
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| Symbol | |
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| ID | 6162722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3394000 |
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| End bp | 3394770 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665842 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001792092 |
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| Protein GI | 171059743 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCTGACA AGGCCGGGCC GCGCATCGTC TCAGTGCGTA TCAGCAGGTC GGGCTGCGAC
GGCACAATCG CCACCGCCCA CTCCCGATTC CGACCGCTGC ATCGACGCGC CGTGCCATCC
GAGCCCCTCA TCGACATCCT TCACCACGAC GACAGCCTGC TGGTGGTGCG CAAGCCGGCC
GGGCTGCTGT CGGTGCCCGG GCGCGGCGAG CATCTGCAGG ACTGCGTGGC GGCCCGTGTG
CAGGCCATCT GGCCCGACGC CCTGATCGTG CACCGGCTCG ACATGGCCAC GTCCGGCCTG
ATGGTGATGG CGCGCGGCCC GGCCGCCCAG CGCGCACTCG GCAGCGCCTT CGAGCACCGC
AGCGTGACGA AACAGTATGT CGCGGTCGTG GCCGGCGACG TCGCCGGCGA CGCAGGTTCG
GTCGACCTGC CGCTGTGCGC CGACTGGCCG AACCGGCCGC GGCAGAAGGT CGACGCCGCG
ATGGGGCGTC CGTCACTGAC CCATTGGCGC CGGGCCACGC CGGCGCACGA AGGCTCGACG
ACCGGCGACA TCGACCGCAC CCGGCTGGAG CTGGAGCCCG TGACAGGACG CTCGCATCAA
CTGCGGGTGC ATCTGCTGGC GCTCGGCCAT CCGATCCTGG GCGACACCCT CTATGCACCC
GACGCGGTGC AACGCATGGC GCCGCGCCTG CTGCTGCACG CCAGCCGGAT CGCATTGCCG
CATCCGGCGG GGGGTGGAAT CTGCGTCTTC AGCGACCCAC CCGCATTCTG A
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| Protein sequence | MSDKAGPRIV SVRISRSGCD GTIATAHSRF RPLHRRAVPS EPLIDILHHD DSLLVVRKPA
GLLSVPGRGE HLQDCVAARV QAIWPDALIV HRLDMATSGL MVMARGPAAQ RALGSAFEHR
SVTKQYVAVV AGDVAGDAGS VDLPLCADWP NRPRQKVDAA MGRPSLTHWR RATPAHEGST
TGDIDRTRLE LEPVTGRSHQ LRVHLLALGH PILGDTLYAP DAVQRMAPRL LLHASRIALP
HPAGGGICVF SDPPAF
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