| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3065 |
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| Symbol | |
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| ID | 6162720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3391075 |
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| End bp | 3392601 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641665840 |
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| Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
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| Protein accession | YP_001792090 |
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| Protein GI | 171059741 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.998246 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACCA CCATCCGCCA GGCCGACCTG ATCGAAAGCG TCGCCGCCGC CCTGCAGTAC
ATCAGCTACT ACCACCCGGC CGACTACATC GCCCACCTGG CGCGCGCCTA CGAGCGCGAG
GCCTCGCCGG CCGCCAAGGA TGCGATCGCG CAGATCCTGA CCAACTCGAA GATGTGCGCC
GAAGGCCATC GGCCGATCTG CCAGGACACC GGCATCGTCA ACGTGTTCCT GAAGATCGGC
ATGGACGTCA AGTGGGAGGG TTTCACCGGC TCGATCGCCG ACGCTGTCAA CGCCGGCGTG
CGCCAGGGTT ACCTGAACCC CGACAACGTG CTGCGCGCCT CGGTGCTCGA CGATCCGATC
TTTGCCCGCA AGAACACCAA GGACAACACG CCGGCCGTGA TCCACATGGA GCTGGTGCCG
GGCAACACGG TCGACGTGAT CGTGGCGGCC AAGGGCGGTG GCAGCGAGAA CAAGTCGAAG
ATGTACATGC TCAACCCGAG CGACAACATC GTCGACTGGG TGCTCAAGAC CGTGCCGACG
ATGGGCGCGG GCTGGTGTCC GCCGGGCATG CTGGGCATCG GCGTGGGCGG TACGGCCGAG
AAGGCCGTGA TGATGGCCAA GGAAGCGTTG ATGGAAGACA TCGACATGTA CGAGCTTCTG
GAACGCGGCC CGCAGAACAA GCTCGAAGAG CTGCGCATCG AGCTGTACGA GAAGGTCAAC
GCGCTGGGCA TCGGCGCCCA AGGCCTGGGC GGCCTGACCA CCGTGCTGGA CGTCAAGATC
AAGACCTTCG CGACCCACGC GGCCAGCAAG CCGATCGCGA TGATCCCCAA CTGCGCCGCC
ACCCGCCACG GCCACTTCGT GCTCGACGGT TCCGGCCCGG CCTACATGGA GCCGCCGAGC
CTCGACCTGT GGCCCAACGT GGCCTGGGCG CCCGACTACA ACAAGAGCAA GCGCGTCGAT
CTCAACACGC TGACCAAGGC CGAAGTGGCG AGCTGGAAGC CGGGCGACAC GCTGCTGCTC
AACGGCAAGA TGCTGACCGG CCGCGACGCT GCCCACAAGC GCATCAACGA CATGCTGGCC
AAGGGCGAGC CGCTGCCGGT GGACTTCACG AACCGCGTCA TCTACTACGT CGGCCCGGTC
GATCCGGTGC GTGACGAGGT CGTCGGCCCG GCCGGCCCGA CCACCGCCAC CCGCATGGAC
GGCTTCACCC GCATGATGCT GGAGAAGACC GGCCTGATCT CGATGGTCGG CAAGGCCGAG
CGCGGCCCGG TGGCGATCCA GGCGATCAAG GACAACCAGA GCGCGTACCT GATGGCCGTG
GGCGGCGCCG CCTACCTGGT CGCCAAGGCG ATCAAGGGCG CGAAGGTCGT CGGCTTTGCC
GACCTCGGCA TGGAAGCGAT CTACGAGTTC GACGTCAAGG ACATGCCGGT GACGGTGGCG
GTCGACGCCA GCGGCACCAG CGTGCACAAC ACCGGGCCGA AGGAATGGCA GGCCCGCATC
GGCAAGATCC CGGTCGTCGA AGCCTGA
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| Protein sequence | MTTTIRQADL IESVAAALQY ISYYHPADYI AHLARAYERE ASPAAKDAIA QILTNSKMCA
EGHRPICQDT GIVNVFLKIG MDVKWEGFTG SIADAVNAGV RQGYLNPDNV LRASVLDDPI
FARKNTKDNT PAVIHMELVP GNTVDVIVAA KGGGSENKSK MYMLNPSDNI VDWVLKTVPT
MGAGWCPPGM LGIGVGGTAE KAVMMAKEAL MEDIDMYELL ERGPQNKLEE LRIELYEKVN
ALGIGAQGLG GLTTVLDVKI KTFATHAASK PIAMIPNCAA TRHGHFVLDG SGPAYMEPPS
LDLWPNVAWA PDYNKSKRVD LNTLTKAEVA SWKPGDTLLL NGKMLTGRDA AHKRINDMLA
KGEPLPVDFT NRVIYYVGPV DPVRDEVVGP AGPTTATRMD GFTRMMLEKT GLISMVGKAE
RGPVAIQAIK DNQSAYLMAV GGAAYLVAKA IKGAKVVGFA DLGMEAIYEF DVKDMPVTVA
VDASGTSVHN TGPKEWQARI GKIPVVEA
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