Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3044 |
Symbol | |
ID | 6161571 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3361205 |
End bp | 3362872 |
Gene Length | 1668 bp |
Protein Length | 555 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641665819 |
Product | hypothetical protein |
Protein accession | YP_001792069 |
Protein GI | 171059720 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.000000101024 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTCTGGTG AACTGCGCAG CGCCCACCAC GACGTCGTGA TCGGCGCGCC GCGCGACCTC GTCGCCACGC GCCGCCCGGC GCTGCTTCAG CGCAGTGACG ACGACTTCAT CGGCGCCACG CTCGAAGCGC TGCGCGCACC GGCCGGCCGC GCGGCCTTGC GCGCCAAGCT CGCCCGTGCC ACCGACGCAC AGGGCCGGCT CAAGCTGTTC CAGCCGATCC AGCGCCAGTT CCACGTCGCG CTGATCGAGG CCTGGTGCGA CACCCCCGGC GCGCCGCGCA TCGACCCCAA GCGGGTCGAT GCCGCCGGCC TGGTGGTGCG CCGACTCGGG CCTCAGGGCG CCGAAGGCTG GATGCACGCC AACGGCCAGG TGCGCGGCTG GGTGCCGCTC GCACGCATCG GCGGCGAGAC GGCCGAACCG CAGGCCGCCG CACGCTTGAC GGCGCGACTG ACCGGCGTGG CGCAGATCGA TCGGCAGCTC AGCCTGCACG CCCGCGAGGA CGCTGACCAC CCGCTCGAAG AGCAGATCAG CGGCCTCTAT CTGGCGCCGC CCGACGTCAA CGCCGACGCC GGCAAGACGC TGTTCTACGG GCTGGTGCCG ACCACCAGCA GCGAGCTGAG CGACGTGCCG CCCGCACCCA CAGGCGACGA CGGTTTCGGC GCCGGCTCGG ACGCCTTCCG CAACCACCTG GTCGAGGCGC TGCGCGGCGA CGCGATGGAC TTGCCCTTCC CCGGCGATCT GCTCGTGCCC GGCTGGTTCG AGGCCAGCGA ATCACCCGGC GTACGCCCAC CCGACGGCGT CACGCAAAAC CAGTTCAACC TGCTGCAACA GGACGTGCGC ACCGCGGCCG GCGCGACCGC CTTGCGCATG CAGCGTTTCC TGCTGTTCCT GCGCCAGATC GCGGGCGAGT TCAATGCCTT CGCGGGTGGC AACGAAGTCA AGACGCTGAA GACGATCCTT GCCTCCATCC AGCTGCCACT GGTGCTGCGC CCGGATGAAA AGGTCGTGCG CTTCGTCCGG GCCGATCAGT TCCTCGCCAA GGCCAGCGCG ATCCTGCTGG AGCAGACCGC CAGCGCTAGC GTCGTCGAGA TGCCGGCTTA CTGGCCCGCG CTGGCCCCGG CCGACGCGAC CCGCCTGAAG AACGCGCTGC ACCAGGCGCT GCAAGCCCGG CTGGCCGCGA TGCAGACCCA GGCCGGCCGC TACGACGAGC CGACCGCGCG CTACAGCGTG CGCGCCTTCG TGCGCCTCAA GCCCGAAGGC CACTGCCCCG CGCGCACCGT CTGGAGCGAG CCGAGCGAGC CCTTCGTGAT CGCGCCCTGG TACGAAGGCG GCGGCGCGCC GCCGGTGCAG ATCCGCCTGC CCGATGCGTC CGACCGCACG CTGCTCAAGG CGCTCAAACC CAACGTCGCC TTCATCGTGC CGCCGTCGAT GCAGAACCTG CTGTCGGGCA AGGCGAAGGA TCTGCTCGAA GGCAAGGGCA GCGTCGGCAC GGCGGGCTTG AGCTGGATCT GCAGCTTCAA CATACCGGTG ATCACGATCT GCGCCTTCAT CGTGCTGAAC ATCTTCCTGA CGCTGTTCAA CTTGGTGTTC GGCTGGCTGT TCTTCATCAA GATCTGCATC CCGTTCCCGA AGCTGGGCAA CAAGCCACCC GGAGGGTCTT CACCATGA
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Protein sequence | MSGELRSAHH DVVIGAPRDL VATRRPALLQ RSDDDFIGAT LEALRAPAGR AALRAKLARA TDAQGRLKLF QPIQRQFHVA LIEAWCDTPG APRIDPKRVD AAGLVVRRLG PQGAEGWMHA NGQVRGWVPL ARIGGETAEP QAAARLTARL TGVAQIDRQL SLHAREDADH PLEEQISGLY LAPPDVNADA GKTLFYGLVP TTSSELSDVP PAPTGDDGFG AGSDAFRNHL VEALRGDAMD LPFPGDLLVP GWFEASESPG VRPPDGVTQN QFNLLQQDVR TAAGATALRM QRFLLFLRQI AGEFNAFAGG NEVKTLKTIL ASIQLPLVLR PDEKVVRFVR ADQFLAKASA ILLEQTASAS VVEMPAYWPA LAPADATRLK NALHQALQAR LAAMQTQAGR YDEPTARYSV RAFVRLKPEG HCPARTVWSE PSEPFVIAPW YEGGGAPPVQ IRLPDASDRT LLKALKPNVA FIVPPSMQNL LSGKAKDLLE GKGSVGTAGL SWICSFNIPV ITICAFIVLN IFLTLFNLVF GWLFFIKICI PFPKLGNKPP GGSSP
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