Gene Lcho_3020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3020 
Symbol 
ID6161086 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3339160 
End bp3339879 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content71% 
IMG OID641665795 
ProductGntR family transcriptional regulator 
Protein accessionYP_001792045 
Protein GI171059696 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCTGA CCACTGCCCG AGCCCGCAAC GCTGCCGCCA ACGACGGGGG CCGCAGCAAC 
CTGGCCGAAC AGGCCTACGT GCAGCTCAAG GGGCTGATCC ACGATTTCGA ACTGCTGCCC
GGCGACCGCT TCACCGAGTC CGAGATGGGC GCGCGCCTGG GCGTGAGCCG CACGCCGGTG
CGCGAGGCCT TGTTCCGGCT GCGCAACGAG GGTTTCCTGG AAGTCGAGAG CAAGAGCGGC
TGGTTCGTGC GGCCGATCGA TTTCGACCGC CTCGACCAGC TCTACGACCT GCGCGTGGTG
CTCGAGCTGG CCAGCGTGGC GCGGCTGTGC GCGCGCAGCG CCGATCCGCC CGAGCTCGAT
GCCCTCAAGG CCGCCTGGCT GGTGCCGCCC GAGGAACGCC TGGCCGGCAC GCACGAGGTC
GGCGAGCTCG ACGAGGACTT CCACGCCACG CTGGTGCGCG CGGCCGGCAA CGCCGAGATC
GCGCGCGTGC ACTGGGACGT GACCGAGCGC GTGCGCATCG TGCGCCGGCT CGATTTCACC
CGCGGCGAGC GCATCGCCGC CACCTACGAC GAACACGCGC AGATCCTGCG CGCGGTGCTG
CAGCGCAAGC TCGACCAGGC CCAGCTGCTG CTGCGCAGCC ACATCGAGCA GAGCAAGACC
GAGGTGCGCA AGATCACGCT GTCGACGCTG CACGAGGCCC GCGGGCGGGC CCGGCGCTGA
 
Protein sequence
MPLTTARARN AAANDGGRSN LAEQAYVQLK GLIHDFELLP GDRFTESEMG ARLGVSRTPV 
REALFRLRNE GFLEVESKSG WFVRPIDFDR LDQLYDLRVV LELASVARLC ARSADPPELD
ALKAAWLVPP EERLAGTHEV GELDEDFHAT LVRAAGNAEI ARVHWDVTER VRIVRRLDFT
RGERIAATYD EHAQILRAVL QRKLDQAQLL LRSHIEQSKT EVRKITLSTL HEARGRARR