Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3020 |
Symbol | |
ID | 6161086 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3339160 |
End bp | 3339879 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641665795 |
Product | GntR family transcriptional regulator |
Protein accession | YP_001792045 |
Protein GI | 171059696 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCTGA CCACTGCCCG AGCCCGCAAC GCTGCCGCCA ACGACGGGGG CCGCAGCAAC CTGGCCGAAC AGGCCTACGT GCAGCTCAAG GGGCTGATCC ACGATTTCGA ACTGCTGCCC GGCGACCGCT TCACCGAGTC CGAGATGGGC GCGCGCCTGG GCGTGAGCCG CACGCCGGTG CGCGAGGCCT TGTTCCGGCT GCGCAACGAG GGTTTCCTGG AAGTCGAGAG CAAGAGCGGC TGGTTCGTGC GGCCGATCGA TTTCGACCGC CTCGACCAGC TCTACGACCT GCGCGTGGTG CTCGAGCTGG CCAGCGTGGC GCGGCTGTGC GCGCGCAGCG CCGATCCGCC CGAGCTCGAT GCCCTCAAGG CCGCCTGGCT GGTGCCGCCC GAGGAACGCC TGGCCGGCAC GCACGAGGTC GGCGAGCTCG ACGAGGACTT CCACGCCACG CTGGTGCGCG CGGCCGGCAA CGCCGAGATC GCGCGCGTGC ACTGGGACGT GACCGAGCGC GTGCGCATCG TGCGCCGGCT CGATTTCACC CGCGGCGAGC GCATCGCCGC CACCTACGAC GAACACGCGC AGATCCTGCG CGCGGTGCTG CAGCGCAAGC TCGACCAGGC CCAGCTGCTG CTGCGCAGCC ACATCGAGCA GAGCAAGACC GAGGTGCGCA AGATCACGCT GTCGACGCTG CACGAGGCCC GCGGGCGGGC CCGGCGCTGA
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Protein sequence | MPLTTARARN AAANDGGRSN LAEQAYVQLK GLIHDFELLP GDRFTESEMG ARLGVSRTPV REALFRLRNE GFLEVESKSG WFVRPIDFDR LDQLYDLRVV LELASVARLC ARSADPPELD ALKAAWLVPP EERLAGTHEV GELDEDFHAT LVRAAGNAEI ARVHWDVTER VRIVRRLDFT RGERIAATYD EHAQILRAVL QRKLDQAQLL LRSHIEQSKT EVRKITLSTL HEARGRARR
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