| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2998 |
|---|
| Symbol | |
|---|
| ID | 6163845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3304005 |
|---|
| End bp | 3306266 |
|---|
| Gene Length | 2262 bp |
|---|
| Protein Length | 753 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641665775 |
|---|
| Product | type I secretion system ATPase |
|---|
| Protein accession | YP_001792025 |
|---|
| Protein GI | 171059676 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 91 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCCG CCCAGCGCCA TCCCGATCCC GATCCCGCGC CCGTCGCGCC AAAACCCACG
GTGGGCCACC GCGCCGATGC CAGCGGCCTG CCGGCCCTGT GCCTGCTCGC TCGCCTGCAC
CACCTGGGCG CCGACGCCGC CAGCCTGCGT CACCAGTTGG GCAAGTCACC GAACGAGGTA
TTCACCACCG ACGACCTGCT GGTGGCGGCC CAGCACCTGG GCCTCAAAGC CAAGCGCCTG
GCCAGCAGCG CCGAGCGCCT GCCGCTGGTG CCGCTGCCGG CGCTGGCGCG CCTGCGCATC
GACACCGGTG ACGGCTCAGC CGTCGAACGC TGGGTGCTGC TGGCCCAGTG CGACGGCCAG
CGTGTGCTGT TCCAGGATGC CGCTGCGGCC GACGGCGGCC GCCCCACGAT CGAGCCGCTG
GCCACCTTCG CCGCGCAATG GAGCGGCGAA CTGATCGTCG CCAGCAGCCG CGCCAGCGTC
GCCGGTGATC TCGCCAGGTT CGACTTCAGC TGGTTCATCC CCAGCCTGGT CAAGCACCGC
CGCCTGCTCG GCGAAGTGCT GCTGGTGTCG CTGTTCCTGC AGCTGTTTGC GCTGGTCTCG
CCGCTGTTCT TCCAGGTCGT GATGGACAAG GTGCTGGTGC ACCGGGGGCT TTCCACGCTC
AACGTGCTGA TGGTCGGGCT GGTGGTCGTG GTGCTGTTCG AGAGCCTGCT CACGCTCTTG
CGCAGCTACG TCTTCACCCA CACCACCAGC CGCATCGACG TCGAGCTGGG CGCGCGGCTG
TTCCGGCATC TGCTGGCGCT GCCCTTGTCT TACTTCCAGG CCCGCCGGGT CGGCGATTCG
GTCGCGCGTG TCAGGGAGCT GGAAAACATC CGCAGCTTCC TGACCGGCAG CGCGCTGACG
CTCGTGCTCG ACCTGCTGTT CTCGGGGGTC TTCATCGCCG TGATGCTGCT CTACAGCGTG
CCGCTGACGC TGGTCGTGCT GGCCAGCGTG CCGATCTACC TGGGCCTGAG CCTGAGCGTG
GTGCCGCTGC TGCGCGCCCG ATTGAACGAG AAGTTCGCCC GCGGCGCCGA GAACCAGGCG
CTGCTGGTCG AGACTCTCAC CGGCATCCAG ACCGTCAAGG CCAGCGCGCT CGAACCCGCC
CTGGCGCGGC GCTGGGACGG CCAGCTCGCC GCCTACGTCA GCGCGAGCCT GCGCACCCAG
ACCCTGGCCA ACGCCGCGCA CGAAGGCGTC AACCTCACCG CCAAGCTCGT CAACGTGGCC
ACGCTGTGGC TCGGCGCCCA GCTGGTGATG GACGGCGCGC TGACGGTGGG CATGTTCGTC
GCGTTCAACA TGTTCGCCGG CCGGGTGGCG CAGCCCATCA TGCGCCTGGC GCAGATGTGG
ACCGACTTCC AGCAGACCGG CATTGCGATG CAGCGCCTGG GCGACATCCT CGACACCCGC
ACCGAGGTGC CACCGAGCAG CGCCGCGCAA CTGCCCGCGC TGCAAGGCCG CATCACGCTC
GACGGCGTGA GCTTCCGCTA CCGCCCCGAC GCGCCGCTGG TACTGCAGGG CCTGAGCCTG
GAGATCGCGC CCGGCGAGGT GATCGGCATC GTCGGGCGCT CCGGCTCGGG CAAGAGCACG
CTGACCAAGC TGATCCAGCG CCTGCACGTG CCCGAACAGG GCCGCGTCAA GGTCGACGGC
ATCGACATCG CGCTGATCGA CGCCGCCCAG CTGCGCCGCC AGGTGGGGGT GGTGCTGCAG
GAGAACTGGC TGTTCAACCG CAGTATCCGC GACAACATCG CCATCGCCGA CCCCGGCGCG
CCGCTCGAGG CGGTGCTGGC GGTGGCGCAG CTGGCCGGGG CGCACGAGTT CATCAGCCAG
CTGCCCGAAG GCTACGACAC GTTGGTGGGT GAACAAGGCG CCAGCCTGTC GGGCGGCCAA
CGCCAGCGCA TCGCCATCGC CCGCGCGCTG TTCGGCAACC CGCGCATCCT GATCTTCGAC
GAAGCCACCA GCGCGCTCGA CTACGAGAGC GAGGCGATCC TGCAGCGCCA CATGGCGATG
ATCTGCCGCG GCCGCACCGT GATCATCATT GCGCACCGCC TGTCGAGCGT GCGCGGCGCG
CACCGCATCA TCGCGATGGA CCAGGGCCGC ATCGTCGAGG CCGGCAGCCA TGAGGTGCTG
CTGCGTACTG ACGGGCTGTA TGCGCAGCTG TGGCGGCTGC AGGCGGGCGG GCCCGCAACA
GGCCCCGCCA CTCCCGCAGG CCAACAGGAG CCACGGCCAT GA
|
|---|
| Protein sequence | MQPAQRHPDP DPAPVAPKPT VGHRADASGL PALCLLARLH HLGADAASLR HQLGKSPNEV
FTTDDLLVAA QHLGLKAKRL ASSAERLPLV PLPALARLRI DTGDGSAVER WVLLAQCDGQ
RVLFQDAAAA DGGRPTIEPL ATFAAQWSGE LIVASSRASV AGDLARFDFS WFIPSLVKHR
RLLGEVLLVS LFLQLFALVS PLFFQVVMDK VLVHRGLSTL NVLMVGLVVV VLFESLLTLL
RSYVFTHTTS RIDVELGARL FRHLLALPLS YFQARRVGDS VARVRELENI RSFLTGSALT
LVLDLLFSGV FIAVMLLYSV PLTLVVLASV PIYLGLSLSV VPLLRARLNE KFARGAENQA
LLVETLTGIQ TVKASALEPA LARRWDGQLA AYVSASLRTQ TLANAAHEGV NLTAKLVNVA
TLWLGAQLVM DGALTVGMFV AFNMFAGRVA QPIMRLAQMW TDFQQTGIAM QRLGDILDTR
TEVPPSSAAQ LPALQGRITL DGVSFRYRPD APLVLQGLSL EIAPGEVIGI VGRSGSGKST
LTKLIQRLHV PEQGRVKVDG IDIALIDAAQ LRRQVGVVLQ ENWLFNRSIR DNIAIADPGA
PLEAVLAVAQ LAGAHEFISQ LPEGYDTLVG EQGASLSGGQ RQRIAIARAL FGNPRILIFD
EATSALDYES EAILQRHMAM ICRGRTVIII AHRLSSVRGA HRIIAMDQGR IVEAGSHEVL
LRTDGLYAQL WRLQAGGPAT GPATPAGQQE PRP
|
|---|
| |