| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2988 |
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| Symbol | |
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| ID | 6162642 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3290684 |
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| End bp | 3292486 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641665765 |
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| Product | peptidase U35 phage prohead HK97 |
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| Protein accession | YP_001792015 |
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| Protein GI | 171059666 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01543] phage prohead protease, HK97 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 90 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCGCA CTGAGCTGGT CAACCGCTCT GCCACCTTCG AGCGGGCGCT GGTCGACCTG
GCCGCGCGGA CCGTGCCGGT TTCGTTGTCC AGCGAACGGC CAGTGATGCG TTACGGCGAG
TTGGAGGTTC TGCGCCACGA ACCCCAGTGC ATCGACCTGA GCCGCGCCAT CGGGGGCTTG
CCGCTGCTGT ACTGCCACGA CCACGCCCAG CCTGTCGGCG TGGTCGAGAA CGTGCGCCTC
GATGGCCGGC GCCTGGTCGG CACCGCACGC TTCGGCCAGT CGGAGAAGGC CCAGGAGGTC
TTCCAAGACG TGCGCGACGG CTTGTTGCGC GGCATCTCGG TGGGCTACCG CATCAACGCC
ACCGAACCCA TTCTCGGCGG CATTGCCGCC ACCTCGTGGA CGCCCTACGA GGCGTCCGTC
TTGGCCGTTC CTGAAGATTC AACCGTCGGT ATCGGCCGCA GCGCTGGCCA ACTCCAAACC
CCTGAAGGGA ATTCCCCCAT GCCCGCAAAC ACCCTCGACC TGCACACCCG CGCAGCTGCC
CCCAACGAAG TGCGCGAGCT GGTCAAGCTC CACGGCCTCA ACGCCAGCGT GGCCGATGGC
CTGATCCAGC GCGGCGCCAC CCTGGACGCG GTGCGCGCCC ACGTCCTGGA CGCCCTGGCG
TCGAGCGACC GGGCCTCGGG TGGCCACCTG AACACGACCT CCAACGGCAT GGAGTACCAC
GGCCGCAGCC TGGCCAGCAT CGGCCACGAA ATCCACGGTC CGCAGGTTGA GCAGATGCAA
GAGGCCCTGG TGGCTCGGAT GGGCGGCCCG GCCGCCAAGA CCGGCAACCA GTACCGCCAC
GCCCGCATGG CCGACATGGC GCGCGACCTG CTGGAGCATC GCGGCCTTCG CACAACGTCG
ATGGCACCGC GCGAGCTGGT CGAGCGGGCG TTGCATACCA CGAGCGACTT TGCGGGCCTG
TTGCAGGGCG CTGGAAATCG GCTGCTGCGC CAGGGCTACG AGTCGGCCCC CAGCATCAAG
CGGGTGTTCA AGGCCAGCAC CGTGGCCGAT TTCCGCGCCA AGCAGAAGCT GAACTTGGGC
GAAGCGCCAG CCCTGCTGAA GGTCAACGAA CACGGGGAGT TCAAGAGCGG CTCCATGGCC
GACACGACCT CGAGCTACAG CCTGGCCACA TTCGGCCGCA TCTTCGGCAT CTCGCGCCAG
GCACTCGTGA ACGACGACCT GAACGCCTTC GGCGACATGT CCGTGCGCTT GGGTAAGGCG
TCGGCCGAAT TCGAAAATCA GTTCCTCGTG GATCTGCTGA CCAGCAATCC CTCGATGTAC
GACGGCACCG CGCTGTTCCA CGCCGCCCAC GGGAACCTGG CCACCGGCGC AGGCTCTGCG
CTACAGCTGT CCGCTCTGAC GGTGGCCCGC CAGGCGATGC GACTGCAGAA AGGCCTGGAC
GGCAAAACGC CGATCGATGC TTCCCCGCGT TACCTGGTGG TGCCGGCTGC ACTGGAAACG
ACCGCCGAGC AGTTGGTGAG CGCCATCACA CCGAACCAGT CTTCCAGCGT CAATCCGTTC
GCCGGCCGGC TGGAGTTGGT GGTAGATCCG CGCCTCGATG CGGTGTCTCC GACGGCCTGG
TATCTGGCCG CCGATTCGGC CGTGATCGAG ACGATCGAGT ACGGCTACCT GGACTCGGCC
AACGGCCCGG AGATCTTCAC CGAAGAAGGC TTCGAAATCG ACGGCCTGCA CATGAAGGTT
CGCCTCGACT TCGGCGGCGG TGTGATCGAC TGGCGCGGCC TCTACAAGTC CGTAGGCGCC
TGA
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| Protein sequence | MSRTELVNRS ATFERALVDL AARTVPVSLS SERPVMRYGE LEVLRHEPQC IDLSRAIGGL
PLLYCHDHAQ PVGVVENVRL DGRRLVGTAR FGQSEKAQEV FQDVRDGLLR GISVGYRINA
TEPILGGIAA TSWTPYEASV LAVPEDSTVG IGRSAGQLQT PEGNSPMPAN TLDLHTRAAA
PNEVRELVKL HGLNASVADG LIQRGATLDA VRAHVLDALA SSDRASGGHL NTTSNGMEYH
GRSLASIGHE IHGPQVEQMQ EALVARMGGP AAKTGNQYRH ARMADMARDL LEHRGLRTTS
MAPRELVERA LHTTSDFAGL LQGAGNRLLR QGYESAPSIK RVFKASTVAD FRAKQKLNLG
EAPALLKVNE HGEFKSGSMA DTTSSYSLAT FGRIFGISRQ ALVNDDLNAF GDMSVRLGKA
SAEFENQFLV DLLTSNPSMY DGTALFHAAH GNLATGAGSA LQLSALTVAR QAMRLQKGLD
GKTPIDASPR YLVVPAALET TAEQLVSAIT PNQSSSVNPF AGRLELVVDP RLDAVSPTAW
YLAADSAVIE TIEYGYLDSA NGPEIFTEEG FEIDGLHMKV RLDFGGGVID WRGLYKSVGA
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