| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2971 |
|---|
| Symbol | |
|---|
| ID | 6160452 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3274646 |
|---|
| End bp | 3276439 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641665747 |
|---|
| Product | ABC transporter |
|---|
| Protein accession | YP_001791998 |
|---|
| Protein GI | 171059649 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4178] ABC-type uncharacterized transport system, permease and ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTGGA ACCAGGAACT GATCAAGAGC GCCACCTGGC TGGCGCAGGC CTACGCGCTG
ACGCTGGTGT GTTTCGGCGC CGTGATGGCG ACGCTTGCGC GCACGACGAT CTGGGGCCGC
CAGTTCTGGG CCCTGAGCGG CGACTACTTC TGGGCCGGCC ACGGCTGGCA GCGGCCGTGG
CGGCGCCTGG CCGGCATCGC GCTGATCCTG TTCTTCGTGC TGCTCGCGGT GCGCATGAAC
GTGCTGTTCT CCTTTTGGTA CAACGGCTTC TACACCTCGA TGCAGACGCT CGACGCCGGC
GCGTTCTGGT TCCACATGAG CCTGTTCGGC CTGCTGGCGG CGCTGCACGT GGCGCGCGCG
CTGCTCAACG CCTACATCCG CTCGTCGTTC ACGATCCACT GGCGGCTGTG GATGAACGAG
CGCATGGTCG CGCGCTGGCT CGACGGCCGG GCCTACTACC TCGGCCGCTT CGCCGAGCCG
GTGGTCGACA ACCCCGAGCA GCGCATCCAG CAGGACGCCA CCAGCCTGGC GTCGGACACC
CTGGCGCTGT CGATGGGCCT GGTCGGCGCG GTGGTGTCGA TGGTCGAGTT CACCGGCATC
CTCTGGAGCC TGTCGGCACC GCTGACGCTC GCCGGCGTCG AGCTGCCACG TGCGATGGTG
TTCCTGGTCT ACCTCTACGT GCTGACCGCC ACCGTGTTCG CGGTCTGGAT CGGCCGGCCG
CTGATCCGCC TGAACTTCCT GAACGAGAAG CTCAACGCCA CCTACCGCTA TCTGCTGATG
CGGCTGCGCG AGTACGGCGA GAGCGTGGCG CTGTATCGCG GCGAGGCGGT CGAGCACCGC
AACCTGACGA GCGGCTTCGC GGCGGTGATC GCCAACGCCT GGGCCACCTT GTGGCGCTCG
CTCAAGTTCG ACGGCTACAA CCTCGGCATC AGCCAGGTCG CGGTGGTGTT CCCGTTCCTG
ATCCAGGCGC CGCGGCTGTT CGCCGGCACC ATCAAGCTCG GCGACGTGAT CCAGACCAGC
CAGGCCTTCG GCCAGGTGGA AGAGGCGCTG TCGTTCTTCC GCACCTCGTA CGACTCGTTC
GCCAGCTACC GCGCGGTGCT CGAACGTCTG AGCGGCTTCA CCAGCAACGT CGACGGCGCC
CGCGCGCTGC AGCTGCCGCA GCTGCAGGTG CGCGCCGATG CGCTGCAGCT GCAGGGCCTG
ACGGTGCGCC GCCCCGATGG CCAGGTGCTG GCGCAGTCCA TCGAGCTGAG CCTCGCGCCC
GGCCAGGCGC TGCTGATCCG CGGGCCATCG GGCAGCGGCA AGACCACGTT GCTGCGCACG
CTGGCCGGTC TGTGGCCGTT TGCCAGCGGC GACGCCGCCC GGCCGGCCGA CGCCGATTGC
CTGTTCCTGT CGCAACGGCC CTATCTGCCG CTGGGCACGC TGCGCGGCGC GCTGGCCTAT
CCGTCGGCCG ACATCGGCGA CGGCGAGGCG CGCGCGATCC TGCAGCAGGT CCAGCTCGGC
CACCTGGGCG AGCAGCTCGA CGTCGACCAG GACTGGTCGC AGGTGCTGTC ACCGGGCGAG
CAGCAACGCC TGGCCTTCGG TCGCGTGCTG GCCAATCGGC CGGCGCTGGT GTTTCTGGAC
GAGGCCACCT CGGCCACCGA CACCGGCCTG GAGCACAGCC TCTACAGCCT GCTGCGCCGC
GAGCTGCCGC AGGCGATGCT GGTCAGTGTC GGGCATCGCG AAACGCTGCA TGCGTTTCAC
GATCAGGTGC TGGAACTCGC GCGCGACGGC CGCTGGGCGC TCGGCTCGGC CTGA
|
|---|
| Protein sequence | MDWNQELIKS ATWLAQAYAL TLVCFGAVMA TLARTTIWGR QFWALSGDYF WAGHGWQRPW
RRLAGIALIL FFVLLAVRMN VLFSFWYNGF YTSMQTLDAG AFWFHMSLFG LLAALHVARA
LLNAYIRSSF TIHWRLWMNE RMVARWLDGR AYYLGRFAEP VVDNPEQRIQ QDATSLASDT
LALSMGLVGA VVSMVEFTGI LWSLSAPLTL AGVELPRAMV FLVYLYVLTA TVFAVWIGRP
LIRLNFLNEK LNATYRYLLM RLREYGESVA LYRGEAVEHR NLTSGFAAVI ANAWATLWRS
LKFDGYNLGI SQVAVVFPFL IQAPRLFAGT IKLGDVIQTS QAFGQVEEAL SFFRTSYDSF
ASYRAVLERL SGFTSNVDGA RALQLPQLQV RADALQLQGL TVRRPDGQVL AQSIELSLAP
GQALLIRGPS GSGKTTLLRT LAGLWPFASG DAARPADADC LFLSQRPYLP LGTLRGALAY
PSADIGDGEA RAILQQVQLG HLGEQLDVDQ DWSQVLSPGE QQRLAFGRVL ANRPALVFLD
EATSATDTGL EHSLYSLLRR ELPQAMLVSV GHRETLHAFH DQVLELARDG RWALGSA
|
|---|
| |