| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2927 |
|---|
| Symbol | glyA |
|---|
| ID | 6160029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3230458 |
|---|
| End bp | 3231705 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641665706 |
|---|
| Product | serine hydroxymethyltransferase |
|---|
| Protein accession | YP_001791957 |
|---|
| Protein GI | 171059608 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGACC GCGCCACCCA GACCCTGGCT GCCATCGACC CCGAAATCAC CGCTGCGATC
GACGCCGAAG TGCGTCGCCA GGAAGAGCAC ATCGAGCTCA TCGCCAGCGA AAACTACACC
TCGCCGGCCG TGATGGCCGC GCAGGGCTCG CAGCTGACCA ACAAGTACGC CGAAGGTTAT
CCGGGCAAGC GCTACTACGG CGGCTGCGAA CACGTCGACG TGGTCGAGCA ACTCGCCATC
GACCGCGCCA AGCAGCTGTT CGGCGCACAA AACGCCAACG TGCAGCCCAA CTCCGGCTCG
CAGGCCAACC AGGCCGTGTT CTTCGGCCTG CTGCAGCCCG GCGACACCAT CATGGGCCTG
AGCTTGGCCG AAGGTGGCCA CCTGACCCAC GGCATGCCGC TGAACATGTC GGGCAAGTGG
TTCAAGGTCG TCTCCTACGG CCTCGACGCC CAGGAAGACA TCGACTACGA CGCGATGGAG
CGTCTGGCCC ACGAGCACAA GCCCAAGCTG ATCATCGCCG GCGCCTCGGC GTTTGCGCTG
CGCATCGACT TCGAGCGCTT CGCCAAGGTC GCCAAGGCGG TCGGTGCCTA TTTCATGGTC
GACATGGCGC ACTACGCCGG CCTGATCGCC GCAGGCGTCT ACCCGAACCC GGTGCCGTTT
GCCGACGTCG TTACCACCAC CACCCACAAG ACCCTGCGCG GCCCGCGTGG CGGCCTGATC
CTGATGACCG ACGCGGTCGC CAAGCAGATC AACAGCGCGA TCTTCCCCGG CATCCAGGGC
GGCCCCCTGA TGCACGTGAT CGCCGGCAAG GCGGTGGCAT TTCAAGAGGC GCTGCAGCCC
GAGTTCAAGG CCTACCAGGA ACAGGTGGTC AAGAACGCGA CCGCGATGGC TGAAACCTTG
ACTGCACGCG GCCTGCGCAT CGTCTCGGGC CGCACCGAGA GCCACGTGAT GCTGGTCGAC
CTGCGCCCCA AGGGCATCAC CGGCAAGGAA GCCGAGGCGC TGCTGGGCCG GGCCCACATC
ACCTGCAACA AGAACGGCAT CCCCAACGAC CCGCAGAAGC CGATGGTCAC CAGCGGCATC
CGCCTGGGTT CGCCGGCGAT GACGACGCGC GGCTTCAAGG AAGAACAGGC CGTGCTGACC
GCCAACCTGA TCGCCGATGT GCTCGAAGCG CCCAACGACG AAGCCGTGCT CGAGCGCGTG
CGTGCCCAGG TTGCGCAACT CACGCGCGAC TTCCCGGTGT ATCGGTGA
|
|---|
| Protein sequence | MFDRATQTLA AIDPEITAAI DAEVRRQEEH IELIASENYT SPAVMAAQGS QLTNKYAEGY
PGKRYYGGCE HVDVVEQLAI DRAKQLFGAQ NANVQPNSGS QANQAVFFGL LQPGDTIMGL
SLAEGGHLTH GMPLNMSGKW FKVVSYGLDA QEDIDYDAME RLAHEHKPKL IIAGASAFAL
RIDFERFAKV AKAVGAYFMV DMAHYAGLIA AGVYPNPVPF ADVVTTTTHK TLRGPRGGLI
LMTDAVAKQI NSAIFPGIQG GPLMHVIAGK AVAFQEALQP EFKAYQEQVV KNATAMAETL
TARGLRIVSG RTESHVMLVD LRPKGITGKE AEALLGRAHI TCNKNGIPND PQKPMVTSGI
RLGSPAMTTR GFKEEQAVLT ANLIADVLEA PNDEAVLERV RAQVAQLTRD FPVYR
|
|---|
| |